miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11671 3' -50.2 NC_003102.1 + 40158 0.66 0.994817
Target:  5'- -cUCGUCGCCccaUCUcGCCGAAgcGAUCg- -3'
miRNA:   3'- gcAGCAGCGG---AGAuCGGUUU--UUAGgu -5'
11671 3' -50.2 NC_003102.1 + 41043 0.7 0.942429
Target:  5'- gGUUGUCGUCUCUAuacccgcugacGCCG---GUCCAa -3'
miRNA:   3'- gCAGCAGCGGAGAU-----------CGGUuuuUAGGU- -5'
11671 3' -50.2 NC_003102.1 + 49275 0.71 0.909012
Target:  5'- uCG-CGUCGCgUCUGGCCAcccAUCUAc -3'
miRNA:   3'- -GCaGCAGCGgAGAUCGGUuuuUAGGU- -5'
11671 3' -50.2 NC_003102.1 + 61876 0.68 0.980411
Target:  5'- gCGUCGUCGCCg-UAGUgauCAAugucuGAUCCGu -3'
miRNA:   3'- -GCAGCAGCGGagAUCG---GUUu----UUAGGU- -5'
11671 3' -50.2 NC_003102.1 + 72034 0.66 0.995564
Target:  5'- aCGUCGcauuccuugCGCCUCUGuCCAc--GUCCAu -3'
miRNA:   3'- -GCAGCa--------GCGGAGAUcGGUuuuUAGGU- -5'
11671 3' -50.2 NC_003102.1 + 74228 1.1 0.008642
Target:  5'- cCGUCGUCGCCUCUAGCCAAAAAUCCAu -3'
miRNA:   3'- -GCAGCAGCGGAGAUCGGUUUUUAGGU- -5'
11671 3' -50.2 NC_003102.1 + 81154 0.68 0.972779
Target:  5'- aGUCGUCGCCg--AGCCuc-AAUCa- -3'
miRNA:   3'- gCAGCAGCGGagaUCGGuuuUUAGgu -5'
11671 3' -50.2 NC_003102.1 + 101410 0.68 0.97807
Target:  5'- uGUUGUCGUUUCUaaAGUCAuugcguGAUCCAu -3'
miRNA:   3'- gCAGCAGCGGAGA--UCGGUuu----UUAGGU- -5'
11671 3' -50.2 NC_003102.1 + 108546 0.7 0.932336
Target:  5'- uCGUCGUCGUCgUCggAGCCGGAA--CCGa -3'
miRNA:   3'- -GCAGCAGCGG-AGa-UCGGUUUUuaGGU- -5'
11671 3' -50.2 NC_003102.1 + 109868 0.66 0.994817
Target:  5'- uCGUCGUCGCCgUCU--UCAAAAuuuucaaacgcAUCCGu -3'
miRNA:   3'- -GCAGCAGCGG-AGAucGGUUUU-----------UAGGU- -5'
11671 3' -50.2 NC_003102.1 + 114488 0.67 0.990756
Target:  5'- gCGUCGaUCGUCUUUGaucGCgCAAAAAUCUg -3'
miRNA:   3'- -GCAGC-AGCGGAGAU---CG-GUUUUUAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.