Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11672 | 3' | -46.6 | NC_003102.1 | + | 32065 | 0.71 | 0.991249 |
Target: 5'- -gGCAacgcAUCGACGuu--GUCGGCgAGGg -3' miRNA: 3'- uaUGU----UAGUUGCuuuuCAGCCGgUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 97841 | 0.72 | 0.978548 |
Target: 5'- -gACGGguuuguACGAAAAGUCGGCCAc- -3' miRNA: 3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 26013 | 0.72 | 0.980225 |
Target: 5'- ---aAGUCAcauguaaccuguuuACGAAAAGUCGGCCAc- -3' miRNA: 3'- uaugUUAGU--------------UGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 26534 | 0.72 | 0.973175 |
Target: 5'- uUGCGucAUCuuucuCGAAAAGUCGGCCAc- -3' miRNA: 3'- uAUGU--UAGuu---GCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 61547 | 0.72 | 0.973175 |
Target: 5'- gAUAUAuGUUuACaAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGU-UAGuUGcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 56255 | 0.73 | 0.970151 |
Target: 5'- uGUAUGAUU--UGAcuaaAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGUUAGuuGCU----UUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 26155 | 0.73 | 0.970151 |
Target: 5'- -aACAuGUCGAUGAccaaAAAGUCGGCCAa- -3' miRNA: 3'- uaUGU-UAGUUGCU----UUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 96334 | 0.73 | 0.963387 |
Target: 5'- --cCGAUCAucaGAuu-GUCGGCCAGGu -3' miRNA: 3'- uauGUUAGUug-CUuuuCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 25939 | 0.74 | 0.946804 |
Target: 5'- -cGCGuuugaGACaAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGUuag--UUGcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 42729 | 0.74 | 0.946804 |
Target: 5'- -aACAuauUCA-CaAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGUu--AGUuGcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 97728 | 0.74 | 0.951345 |
Target: 5'- -gACAGguuuguACGAAAAGUCGGCCAc- -3' miRNA: 3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 61429 | 0.75 | 0.925903 |
Target: 5'- aGUAUAAUaaaauuuACGAAAAGUCuGCCAGGu -3' miRNA: 3'- -UAUGUUAgu-----UGCUUUUCAGcCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 97675 | 0.75 | 0.919986 |
Target: 5'- -gACGuUC-ACGAAAAGUCGGCCAc- -3' miRNA: 3'- uaUGUuAGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 27859 | 0.75 | 0.907324 |
Target: 5'- -cGCAAUCGguGCGGAGAaUCGGgCCAGGc -3' miRNA: 3'- uaUGUUAGU--UGCUUUUcAGCC-GGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 42829 | 0.76 | 0.878757 |
Target: 5'- -aACAuGUUAAUGAAAAGUCaGCCGGGu -3' miRNA: 3'- uaUGU-UAGUUGCUUUUCAGcCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 66934 | 0.79 | 0.759476 |
Target: 5'- aAUACAAaauuUUAuugugauAUGAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGUU----AGU-------UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104526 | 0.79 | 0.749143 |
Target: 5'- uGUGCAAUaauuGCGucaucuaAAAAGUCGGCCAGGu -3' miRNA: 3'- -UAUGUUAgu--UGC-------UUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 10484 | 0.8 | 0.70781 |
Target: 5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 10649 | 0.8 | 0.72919 |
Target: 5'- -gACuuaagC-ACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGuua--GuUGCUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 26100 | 0.8 | 0.70781 |
Target: 5'- -gGCuuaaacACGAAAAGUCGGCCAGGu -3' miRNA: 3'- uaUGuuagu-UGCUUUUCAGCCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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