miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 42829 0.76 0.878757
Target:  5'- -aACAuGUUAAUGAAAAGUCaGCCGGGu -3'
miRNA:   3'- uaUGU-UAGUUGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 49147 0.67 0.999624
Target:  5'- -aACAAUCGAUGGAuacccaAAGUggCGGCCAa- -3'
miRNA:   3'- uaUGUUAGUUGCUU------UUCA--GCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 54422 0.83 0.587231
Target:  5'- gGUGCAauaacGUCAAaaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-----UAGUUgcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 56163 0.8 0.718543
Target:  5'- uUAUGAUUuauuuUGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGUUAGuu---GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 56255 0.73 0.970151
Target:  5'- uGUAUGAUU--UGAcuaaAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAGuuGCU----UUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 61429 0.75 0.925903
Target:  5'- aGUAUAAUaaaauuuACGAAAAGUCuGCCAGGu -3'
miRNA:   3'- -UAUGUUAgu-----UGCUUUUCAGcCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 61547 0.72 0.973175
Target:  5'- gAUAUAuGUUuACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-UAGuUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 66934 0.79 0.759476
Target:  5'- aAUACAAaauuUUAuugugauAUGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUU----AGU-------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67033 0.81 0.686131
Target:  5'- uUACAacacGUUAugaauauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGU----UAGUu------GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67135 0.86 0.431362
Target:  5'- cAUGuCGAUCGcuuauCGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAU-GUUAGUu----GCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67220 0.86 0.412379
Target:  5'- uUACAuGUCGaugacuuauuACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- uAUGU-UAGU----------UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 67281 0.69 0.997981
Target:  5'- uUGCAAaC-AUGuuuAAAGUCGGCCAGa -3'
miRNA:   3'- uAUGUUaGuUGCu--UUUCAGCCGGUCc -5'
11672 3' -46.6 NC_003102.1 + 76444 0.69 0.995931
Target:  5'- aGUAaAGUUuAUGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 76524 0.87 0.376008
Target:  5'- uGUACAuuaaaAUUuACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGU-----UAGuUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 76646 1.1 0.02008
Target:  5'- cAUACAAUCAACGAAAAGUCGGCCAGGu -3'
miRNA:   3'- -UAUGUUAGUUGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 89311 0.84 0.511997
Target:  5'- uUACAuguUUAaccACGAAAAGUCGGCCGGGu -3'
miRNA:   3'- uAUGUu--AGU---UGCUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 95461 0.67 0.999515
Target:  5'- -cGCAAagGugGGAAcgaaacuAGUCGuGCCGGGu -3'
miRNA:   3'- uaUGUUagUugCUUU-------UCAGC-CGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 96334 0.73 0.963387
Target:  5'- --cCGAUCAucaGAuu-GUCGGCCAGGu -3'
miRNA:   3'- uauGUUAGUug-CUuuuCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 97675 0.75 0.919986
Target:  5'- -gACGuUC-ACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUuAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 97728 0.74 0.951345
Target:  5'- -gACAGguuuguACGAAAAGUCGGCCAc- -3'
miRNA:   3'- uaUGUUagu---UGCUUUUCAGCCGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.