miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 26193 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26134 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 130 0.7 0.996645
Target:  5'- cGCGaGGCCGACgag-CGUGAGCUc- -3'
miRNA:   3'- uUGCaCCGGCUGaaaaGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 89482 0.7 0.997194
Target:  5'- aAACccGGCCGACUUUUCGUGguuaAACa-- -3'
miRNA:   3'- -UUGcaCCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 121813 0.7 0.997667
Target:  5'- gAACcUGGCCGACUUUUCgAUAAGu--- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAG-UAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 112767 0.7 0.996645
Target:  5'- gAACcUGGCa-ACUUUUCGUAAACUUUg -3'
miRNA:   3'- -UUGcACCGgcUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 69535 0.71 0.995278
Target:  5'- cGACGUGGCCGAgUUUUUGgu-GCa-- -3'
miRNA:   3'- -UUGCACCGGCUgAAAAGUauuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 25916 0.71 0.993489
Target:  5'- gAACGUGuCUGACUUUUUGUAGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 104350 0.71 0.993489
Target:  5'- gAACcUGGCCGACUUUUUAgauGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUau-UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 36211 0.71 0.993489
Target:  5'- gAACcUGGCCGACUUUUUGUAAuUUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUuGAAA- -5'
11672 5' -45.2 NC_003102.1 + 66980 0.71 0.99241
Target:  5'- aAACGUGuCUGACUUUUCGUuAACUa- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 74912 0.72 0.984726
Target:  5'- gAACG-GGCCGAUUcgugCGUAGACUUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAaaa-GUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 103789 0.72 0.989828
Target:  5'- gAACGcGuCCGACUUUUCGUGAACa-- -3'
miRNA:   3'- -UUGCaCcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 61601 0.73 0.982651
Target:  5'- gAACcUGGCaGACUUUUCGUAAAUUUUa -3'
miRNA:   3'- -UUGcACCGgCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 17292 0.73 0.972193
Target:  5'- cGACGUGGCCGGCcUUUUuUAGAUUg- -3'
miRNA:   3'- -UUGCACCGGCUGaAAAGuAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 55993 0.73 0.975153
Target:  5'- gAACcUGGCCGACUUUucaaaauaaaUCAUAAACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAA----------AGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112472 0.74 0.957811
Target:  5'- gAACcUGGCUGACUUUUCAUAAAa--- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 103480 0.74 0.953541
Target:  5'- gAACcUGGCCGACUUUUCGUGcucaAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 54314 0.74 0.953541
Target:  5'- cAACuUGGCCGACUUUUCAaaguaUAAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGU-----AUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 76479 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUuGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.