miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 26579 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26711 0.82 0.635065
Target:  5'- gAACGUGGCCGACUUUUUAgauGGCg-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUau-UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 32576 0.67 0.999913
Target:  5'- gAGCGcGGCC--CUUUUCAUAAACa-- -3'
miRNA:   3'- -UUGCaCCGGcuGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 36097 0.66 0.999935
Target:  5'- gAACcUGuCUGACUUUUUAUAAACUUUa -3'
miRNA:   3'- -UUGcACcGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 36211 0.71 0.993489
Target:  5'- gAACcUGGCCGACUUUUUGUAAuUUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUuGAAA- -5'
11672 5' -45.2 NC_003102.1 + 36230 0.9 0.28928
Target:  5'- gAACGUGGCCGACUUUUCAUGuACa-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 42663 0.69 0.999153
Target:  5'- gAACccGGCUGACUUUUCAUuAACa-- -3'
miRNA:   3'- -UUGcaCCGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 42895 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUUGUGAAUa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 54314 0.74 0.953541
Target:  5'- cAACuUGGCCGACUUUUCAaaguaUAAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGU-----AUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 54594 0.68 0.999461
Target:  5'- gAACcUGGCCGACUUUUUuuuGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGuauUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 54789 0.66 0.999974
Target:  5'- gAACcUGGCUGACUUUUUAgauuuuuACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUauu----UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 55993 0.73 0.975153
Target:  5'- gAACcUGGCCGACUUUucaaaauaaaUCAUAAACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAA----------AGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 56085 0.66 0.999974
Target:  5'- gAACcUGGCCGACUUUuuagucaaaUCAUAcACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAA---------AGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 56126 0.67 0.999741
Target:  5'- gAACGUGuCUGACUUUUCGUAAc---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 56218 0.77 0.887421
Target:  5'- gAACGUGuCUGACUUUUCGUAAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 58046 0.69 0.998706
Target:  5'- gAACGUGGCCGuggcGCUUUUUAUccAUUUg -3'
miRNA:   3'- -UUGCACCGGC----UGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 61379 0.79 0.818294
Target:  5'- aAACcUGGCCGACUUUUUGUAAACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 61601 0.73 0.982651
Target:  5'- gAACcUGGCaGACUUUUCGUAAAUUUUa -3'
miRNA:   3'- -UUGcACCGgCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 66980 0.71 0.99241
Target:  5'- aAACGUGuCUGACUUUUCGUuAACUa- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 67113 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCAUAucACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-UGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.