miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 130 0.7 0.996645
Target:  5'- cGCGaGGCCGACgag-CGUGAGCUc- -3'
miRNA:   3'- uUGCaCCGGCUGaaaaGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 10518 0.77 0.879678
Target:  5'- gAACGUGuCUGACUUUUCGUAGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 10574 0.79 0.798724
Target:  5'- gAACcUGGCCGACUUUUCGUGAggccaACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUU-----UGAAa -5'
11672 5' -45.2 NC_003102.1 + 10600 0.67 0.999847
Target:  5'- gAACGUGuCUGACUUUUCGUAGu---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 10650 0.75 0.948989
Target:  5'- aAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 10683 0.68 0.999574
Target:  5'- aAACuUGuCUGACUUUUCAUGAACUg- -3'
miRNA:   3'- -UUGcACcGGCUGAAAAGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 10732 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUCGU--GCUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAaa -5'
11672 5' -45.2 NC_003102.1 + 10815 0.77 0.887421
Target:  5'- uAACcUGGCCGACUUUUCGU--GCUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 16987 0.68 0.999307
Target:  5'- uAACGUGGCCGAUccuacaaUUUUUaAUAAACg-- -3'
miRNA:   3'- -UUGCACCGGCUG-------AAAAG-UAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 17292 0.73 0.972193
Target:  5'- cGACGUGGCCGGCcUUUUuUAGAUUg- -3'
miRNA:   3'- -UUGCACCGGCUGaAAAGuAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 25836 0.98 0.112468
Target:  5'- gAACGUGGCCGACUUUUCGUAAACa-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 25916 0.71 0.993489
Target:  5'- gAACGUGuCUGACUUUUUGUAGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 25968 0.76 0.915561
Target:  5'- gAACcUGGCCGACUUUUCGUGAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 26048 0.79 0.808608
Target:  5'- aAACcUGGCCGACUUUUCGUGAucaauACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUU-----UGAAa -5'
11672 5' -45.2 NC_003102.1 + 26107 0.68 0.999322
Target:  5'- gAACcUGGCCGACUUUUUGUGcucaAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26134 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26190 0.77 0.871663
Target:  5'- gAACcUGGCCGACUUUUCGU--GCUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 26193 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26267 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 26362 0.82 0.6578
Target:  5'- gAACGUGGCCGACUUUUCGaGAAa--- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUaUUUgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.