miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 137448 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137371 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137295 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137239 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 137192 0.76 0.908959
Target:  5'- gAACGUGGCCaACUUUUCGUGuACa-- -3'
miRNA:   3'- -UUGCACCGGcUGAAAAGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137162 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 132060 0.79 0.788653
Target:  5'- aAACGcGGCCGACUUuuuaaaaacaugUUCAUAAACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAA------------AAGUAUUUGAAa -5'
11672 5' -45.2 NC_003102.1 + 121956 0.76 0.908959
Target:  5'- gAACGUGGCCGACUugUUUCGauuACUa- -3'
miRNA:   3'- -UUGCACCGGCUGA--AAAGUauuUGAaa -5'
11672 5' -45.2 NC_003102.1 + 121893 0.77 0.894886
Target:  5'- gAACcUGGCCGACUUUUCGU--ACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 121813 0.7 0.997667
Target:  5'- gAACcUGGCCGACUUUUCgAUAAGu--- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAG-UAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 121760 0.75 0.94415
Target:  5'- gAACGUGuuUGACUUUUCAUAAACg-- -3'
miRNA:   3'- -UUGCACcgGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 121681 0.67 0.999847
Target:  5'- gAACGUGuCUGACUUUUCGUAGu---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 112785 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUuuauagUCGUGGACUa- -3'
miRNA:   3'- -UUGCACcGGCUGAAA------AGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 112767 0.7 0.996645
Target:  5'- gAACcUGGCa-ACUUUUCGUAAACUUUg -3'
miRNA:   3'- -UUGcACCGgcUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 112701 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112569 0.77 0.871663
Target:  5'- gAACcUGGCCGACUUUUCGUuGACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112472 0.74 0.957811
Target:  5'- gAACcUGGCUGACUUUUCAUAAAa--- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 110516 0.66 0.999965
Target:  5'- cGACGUGGCCGACaucaCGUAc----- -3'
miRNA:   3'- -UUGCACCGGCUGaaaaGUAUuugaaa -5'
11672 5' -45.2 NC_003102.1 + 104768 1.05 0.044709
Target:  5'- gAACGUGGCCGACUUUUCAUAAACUUUa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 104636 0.69 0.99895
Target:  5'- gAACcUGGCCGACUUUUUGUuGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.