miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 76611 1.05 0.044709
Target:  5'- gAACGUGGCCGACUUUUCAUAAACUUUa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 104768 1.05 0.044709
Target:  5'- gAACGUGGCCGACUUUUCAUAAACUUUa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 97839 0.98 0.109237
Target:  5'- gAACGUGGCCGACUUUUCGUGAACg-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 25836 0.98 0.112468
Target:  5'- gAACGUGGCCGACUUUUCGUAAACa-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 36230 0.9 0.28928
Target:  5'- gAACGUGGCCGACUUUUCAUGuACa-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 89440 0.88 0.381128
Target:  5'- gAACGUGuCCGACUUUUCGUAAACUUUa -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 98010 0.88 0.390386
Target:  5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 97953 0.88 0.390386
Target:  5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 97896 0.88 0.390386
Target:  5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 89508 0.86 0.448905
Target:  5'- gAACGUGGCUGACUUUUCGUAGAa--- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 76352 0.86 0.459123
Target:  5'- gAACcUGGCCGACUUUUCGUAAAUUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 26711 0.82 0.635065
Target:  5'- gAACGUGGCCGACUUUUUAgauGGCg-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUau-UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26362 0.82 0.6578
Target:  5'- gAACGUGGCCGACUUUUCGaGAAa--- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUaUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 137162 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 137239 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 132060 0.79 0.788653
Target:  5'- aAACGcGGCCGACUUuuuaaaaacaugUUCAUAAACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAA------------AAGUAUUUGAAa -5'
11672 5' -45.2 NC_003102.1 + 10574 0.79 0.798724
Target:  5'- gAACcUGGCCGACUUUUCGUGAggccaACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUU-----UGAAa -5'
11672 5' -45.2 NC_003102.1 + 26048 0.79 0.808608
Target:  5'- aAACcUGGCCGACUUUUCGUGAucaauACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUU-----UGAAa -5'
11672 5' -45.2 NC_003102.1 + 61379 0.79 0.818294
Target:  5'- aAACcUGGCCGACUUUUUGUAAACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 67308 0.78 0.863382
Target:  5'- gAACcUGGCCGACUUUUCgAUAAGCg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAG-UAUUUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.