miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 74912 0.72 0.984726
Target:  5'- gAACG-GGCCGAUUcgugCGUAGACUUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAaaa-GUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 26579 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 103657 0.76 0.915561
Target:  5'- gAACcUGGCCGACUcUUCAUAGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAaAAGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 76479 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUuGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 121760 0.75 0.94415
Target:  5'- gAACGUGuuUGACUUUUCAUAAACg-- -3'
miRNA:   3'- -UUGCACcgGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 54314 0.74 0.953541
Target:  5'- cAACuUGGCCGACUUUUCAaaguaUAAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGU-----AUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 103480 0.74 0.953541
Target:  5'- gAACcUGGCCGACUUUUCGUGcucaAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112472 0.74 0.957811
Target:  5'- gAACcUGGCUGACUUUUCAUAAAa--- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 55993 0.73 0.975153
Target:  5'- gAACcUGGCCGACUUUucaaaauaaaUCAUAAACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAA----------AGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 10518 0.77 0.879678
Target:  5'- gAACGUGuCUGACUUUUCGUAGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112569 0.77 0.871663
Target:  5'- gAACcUGGCCGACUUUUCGUuGACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 104516 0.77 0.871663
Target:  5'- gAACcUGGCCGACUUUUCGUuGACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 89440 0.88 0.381128
Target:  5'- gAACGUGuCCGACUUUUCGUAAACUUUa -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 89508 0.86 0.448905
Target:  5'- gAACGUGGCUGACUUUUCGUAGAa--- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 76352 0.86 0.459123
Target:  5'- gAACcUGGCCGACUUUUCGUAAAUUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 26362 0.82 0.6578
Target:  5'- gAACGUGGCCGACUUUUCGaGAAa--- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUaUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 137162 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 137239 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 132060 0.79 0.788653
Target:  5'- aAACGcGGCCGACUUuuuaaaaacaugUUCAUAAACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAA------------AAGUAUUUGAAa -5'
11672 5' -45.2 NC_003102.1 + 61379 0.79 0.818294
Target:  5'- aAACcUGGCCGACUUUUUGUAAACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.