miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 54789 0.66 0.999974
Target:  5'- gAACcUGGCUGACUUUUUAgauuuuuACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUauu----UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 26267 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 42895 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUUGUGAAUa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 104768 1.05 0.044709
Target:  5'- gAACGUGGCCGACUUUUCAUAAACUUUa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 112785 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUuuauagUCGUGGACUa- -3'
miRNA:   3'- -UUGCACcGGCUGAAA------AGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 56126 0.67 0.999741
Target:  5'- gAACGUGuCUGACUUUUCGUAAc---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 26107 0.68 0.999322
Target:  5'- gAACcUGGCCGACUUUUUGUGcucaAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 67210 0.69 0.999153
Target:  5'- gAACcUGGCCGACUUUUCGa------- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUauuugaaa -5'
11672 5' -45.2 NC_003102.1 + 121813 0.7 0.997667
Target:  5'- gAACcUGGCCGACUUUUCgAUAAGu--- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAG-UAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 10650 0.75 0.948989
Target:  5'- aAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 103789 0.72 0.989828
Target:  5'- gAACGcGuCCGACUUUUCGUGAACa-- -3'
miRNA:   3'- -UUGCaCcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 89482 0.7 0.997194
Target:  5'- aAACccGGCCGACUUUUCGUGguuaAACa-- -3'
miRNA:   3'- -UUGcaCCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 89572 0.67 0.999913
Target:  5'- gAACGUGuCUGACUUUUCAuguuuUAAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGU-----AUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 61601 0.73 0.982651
Target:  5'- gAACcUGGCaGACUUUUCGUAAAUUUUa -3'
miRNA:   3'- -UUGcACCGgCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 103730 0.67 0.999847
Target:  5'- aAACGUGuCUGACUUUUCGcGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 58046 0.69 0.998706
Target:  5'- gAACGUGGCCGuggcGCUUUUUAUccAUUUg -3'
miRNA:   3'- -UUGCACCGGC----UGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 17292 0.73 0.972193
Target:  5'- cGACGUGGCCGGCcUUUUuUAGAUUg- -3'
miRNA:   3'- -UUGCACCGGCUGaAAAGuAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 10732 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUCGU--GCUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAaa -5'
11672 5' -45.2 NC_003102.1 + 103671 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUUCGcGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 54594 0.68 0.999461
Target:  5'- gAACcUGGCCGACUUUUUuuuGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGuauUUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.