miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 89572 0.67 0.999913
Target:  5'- gAACGUGuCUGACUUUUCAuguuuUAAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGU-----AUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 121893 0.77 0.894886
Target:  5'- gAACcUGGCCGACUUUUCGU--ACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 121956 0.76 0.908959
Target:  5'- gAACGUGGCCGACUugUUUCGauuACUa- -3'
miRNA:   3'- -UUGCACCGGCUGA--AAAGUauuUGAaa -5'
11672 5' -45.2 NC_003102.1 + 67398 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCGUAAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 61601 0.73 0.982651
Target:  5'- gAACcUGGCaGACUUUUCGUAAAUUUUa -3'
miRNA:   3'- -UUGcACCGgCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 10574 0.79 0.798724
Target:  5'- gAACcUGGCCGACUUUUCGUGAggccaACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUU-----UGAAa -5'
11672 5' -45.2 NC_003102.1 + 56218 0.77 0.887421
Target:  5'- gAACGUGuCUGACUUUUCGUAAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 89482 0.7 0.997194
Target:  5'- aAACccGGCCGACUUUUCGUGguuaAACa-- -3'
miRNA:   3'- -UUGcaCCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137371 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 25968 0.76 0.915561
Target:  5'- gAACcUGGCCGACUUUUCGUGAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 67210 0.69 0.999153
Target:  5'- gAACcUGGCCGACUUUUCGa------- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUauuugaaa -5'
11672 5' -45.2 NC_003102.1 + 26107 0.68 0.999322
Target:  5'- gAACcUGGCCGACUUUUUGUGcucaAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 97953 0.88 0.390386
Target:  5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26711 0.82 0.635065
Target:  5'- gAACGUGGCCGACUUUUUAgauGGCg-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUau-UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137192 0.76 0.908959
Target:  5'- gAACGUGGCCaACUUUUCGUGuACa-- -3'
miRNA:   3'- -UUGCACCGGcUGAAAAGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26267 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 17292 0.73 0.972193
Target:  5'- cGACGUGGCCGGCcUUUUuUAGAUUg- -3'
miRNA:   3'- -UUGCACCGGCUGaAAAGuAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 54594 0.68 0.999461
Target:  5'- gAACcUGGCCGACUUUUUuuuGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGuauUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 67113 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCAUAucACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-UGaaa -5'
11672 5' -45.2 NC_003102.1 + 137448 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.