miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 25968 0.76 0.915561
Target:  5'- gAACcUGGCCGACUUUUCGUGAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 67398 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCGUAAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 69535 0.71 0.995278
Target:  5'- cGACGUGGCCGAgUUUUUGgu-GCa-- -3'
miRNA:   3'- -UUGCACCGGCUgAAAAGUauuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 56126 0.67 0.999741
Target:  5'- gAACGUGuCUGACUUUUCGUAAc---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 67308 0.78 0.863382
Target:  5'- gAACcUGGCCGACUUUUCgAUAAGCg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAG-UAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112701 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 42895 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUUGUGAAUa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112785 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUuuauagUCGUGGACUa- -3'
miRNA:   3'- -UUGCACcGGCUGAAA------AGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 104482 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 103671 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUUCGcGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 67113 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCAUAucACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-UGaaa -5'
11672 5' -45.2 NC_003102.1 + 137295 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 10650 0.75 0.948989
Target:  5'- aAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 103789 0.72 0.989828
Target:  5'- gAACGcGuCCGACUUUUCGUGAACa-- -3'
miRNA:   3'- -UUGCaCcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 58046 0.69 0.998706
Target:  5'- gAACGUGGCCGuggcGCUUUUUAUccAUUUg -3'
miRNA:   3'- -UUGCACCGGC----UGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 54594 0.68 0.999461
Target:  5'- gAACcUGGCCGACUUUUUuuuGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGuauUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 97896 0.88 0.390386
Target:  5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26048 0.79 0.808608
Target:  5'- aAACcUGGCCGACUUUUCGUGAucaauACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUU-----UGAAa -5'
11672 5' -45.2 NC_003102.1 + 10815 0.77 0.887421
Target:  5'- uAACcUGGCCGACUUUUCGU--GCUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 137192 0.76 0.908959
Target:  5'- gAACGUGGCCaACUUUUCGUGuACa-- -3'
miRNA:   3'- -UUGCACCGGcUGAAAAGUAUuUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.