miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 137295 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137371 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 97953 0.88 0.390386
Target:  5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26711 0.82 0.635065
Target:  5'- gAACGUGGCCGACUUUUUAgauGGCg-- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUau-UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 76611 1.05 0.044709
Target:  5'- gAACGUGGCCGACUUUUCAUAAACUUUa -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 137162 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 137239 0.82 0.6578
Target:  5'- gAACGcGGCCGACUUUUCAUAgccguaGACUUg -3'
miRNA:   3'- -UUGCaCCGGCUGAAAAGUAU------UUGAAa -5'
11672 5' -45.2 NC_003102.1 + 89508 0.86 0.448905
Target:  5'- gAACGUGGCUGACUUUUCGUAGAa--- -3'
miRNA:   3'- -UUGCACCGGCUGAAAAGUAUUUgaaa -5'
11672 5' -45.2 NC_003102.1 + 42663 0.69 0.999153
Target:  5'- gAACccGGCUGACUUUUCAUuAACa-- -3'
miRNA:   3'- -UUGcaCCGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 10518 0.77 0.879678
Target:  5'- gAACGUGuCUGACUUUUCGUAGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26193 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26134 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112767 0.7 0.996645
Target:  5'- gAACcUGGCa-ACUUUUCGUAAACUUUg -3'
miRNA:   3'- -UUGcACCGgcUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 130 0.7 0.996645
Target:  5'- cGCGaGGCCGACgag-CGUGAGCUc- -3'
miRNA:   3'- uUGCaCCGGCUGaaaaGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 104350 0.71 0.993489
Target:  5'- gAACcUGGCCGACUUUUUAgauGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUau-UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 25916 0.71 0.993489
Target:  5'- gAACGUGuCUGACUUUUUGUAGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 36211 0.71 0.993489
Target:  5'- gAACcUGGCCGACUUUUUGUAAuUUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUuGAAA- -5'
11672 5' -45.2 NC_003102.1 + 76479 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUuGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 103657 0.76 0.915561
Target:  5'- gAACcUGGCCGACUcUUCAUAGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAaAAGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 26579 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.