Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11672 | 5' | -45.2 | NC_003102.1 | + | 67210 | 0.69 | 0.999153 |
Target: 5'- gAACcUGGCCGACUUUUCGa------- -3' miRNA: 3'- -UUGcACCGGCUGAAAAGUauuugaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 67308 | 0.78 | 0.863382 |
Target: 5'- gAACcUGGCCGACUUUUCgAUAAGCg-- -3' miRNA: 3'- -UUGcACCGGCUGAAAAG-UAUUUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 67398 | 0.76 | 0.921869 |
Target: 5'- gAACcUGGCCGACUUUUCGUAAu---- -3' miRNA: 3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 69535 | 0.71 | 0.995278 |
Target: 5'- cGACGUGGCCGAgUUUUUGgu-GCa-- -3' miRNA: 3'- -UUGCACCGGCUgAAAAGUauuUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 74912 | 0.72 | 0.984726 |
Target: 5'- gAACG-GGCCGAUUcgugCGUAGACUUUg -3' miRNA: 3'- -UUGCaCCGGCUGAaaa-GUAUUUGAAA- -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 76352 | 0.86 | 0.459123 |
Target: 5'- gAACcUGGCCGACUUUUCGUAAAUUUUa -3' miRNA: 3'- -UUGcACCGGCUGAAAAGUAUUUGAAA- -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 76479 | 0.75 | 0.94415 |
Target: 5'- gAACcUGGCCGACUUUUCGUuGAUUg- -3' miRNA: 3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 76611 | 1.05 | 0.044709 |
Target: 5'- gAACGUGGCCGACUUUUCAUAAACUUUa -3' miRNA: 3'- -UUGCACCGGCUGAAAAGUAUUUGAAA- -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 89440 | 0.88 | 0.381128 |
Target: 5'- gAACGUGuCCGACUUUUCGUAAACUUUa -3' miRNA: 3'- -UUGCACcGGCUGAAAAGUAUUUGAAA- -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 89482 | 0.7 | 0.997194 |
Target: 5'- aAACccGGCCGACUUUUCGUGguuaAACa-- -3' miRNA: 3'- -UUGcaCCGGCUGAAAAGUAU----UUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 89508 | 0.86 | 0.448905 |
Target: 5'- gAACGUGGCUGACUUUUCGUAGAa--- -3' miRNA: 3'- -UUGCACCGGCUGAAAAGUAUUUgaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 89572 | 0.67 | 0.999913 |
Target: 5'- gAACGUGuCUGACUUUUCAuguuuUAAACa-- -3' miRNA: 3'- -UUGCACcGGCUGAAAAGU-----AUUUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 97839 | 0.98 | 0.109237 |
Target: 5'- gAACGUGGCCGACUUUUCGUGAACg-- -3' miRNA: 3'- -UUGCACCGGCUGAAAAGUAUUUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 97896 | 0.88 | 0.390386 |
Target: 5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3' miRNA: 3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 97953 | 0.88 | 0.390386 |
Target: 5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3' miRNA: 3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 98010 | 0.88 | 0.390386 |
Target: 5'- gAACGUGGCCGACUUUUCGUAcaAACc-- -3' miRNA: 3'- -UUGCACCGGCUGAAAAGUAU--UUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 103480 | 0.74 | 0.953541 |
Target: 5'- gAACcUGGCCGACUUUUCGUGcucaAACg-- -3' miRNA: 3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 103657 | 0.76 | 0.915561 |
Target: 5'- gAACcUGGCCGACUcUUCAUAGAUUg- -3' miRNA: 3'- -UUGcACCGGCUGAaAAGUAUUUGAaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 103671 | 0.67 | 0.9998 |
Target: 5'- gAACGUGuCUGACUUUUCGcGGACa-- -3' miRNA: 3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5' |
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11672 | 5' | -45.2 | NC_003102.1 | + | 103730 | 0.67 | 0.999847 |
Target: 5'- aAACGUGuCUGACUUUUCGcGGACa-- -3' miRNA: 3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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