miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 54789 0.66 0.999974
Target:  5'- gAACcUGGCUGACUUUUUAgauuuuuACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUauu----UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 56085 0.66 0.999974
Target:  5'- gAACcUGGCCGACUUUuuagucaaaUCAUAcACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAA---------AGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 110516 0.66 0.999965
Target:  5'- cGACGUGGCCGACaucaCGUAc----- -3'
miRNA:   3'- -UUGCACCGGCUGaaaaGUAUuugaaa -5'
11672 5' -45.2 NC_003102.1 + 36097 0.66 0.999935
Target:  5'- gAACcUGuCUGACUUUUUAUAAACUUUa -3'
miRNA:   3'- -UUGcACcGGCUGAAAAGUAUUUGAAA- -5'
11672 5' -45.2 NC_003102.1 + 89572 0.67 0.999913
Target:  5'- gAACGUGuCUGACUUUUCAuguuuUAAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGU-----AUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 32576 0.67 0.999913
Target:  5'- gAGCGcGGCC--CUUUUCAUAAACa-- -3'
miRNA:   3'- -UUGCaCCGGcuGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 103730 0.67 0.999847
Target:  5'- aAACGUGuCUGACUUUUCGcGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 10600 0.67 0.999847
Target:  5'- gAACGUGuCUGACUUUUCGUAGu---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 121681 0.67 0.999847
Target:  5'- gAACGUGuCUGACUUUUCGUAGu---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 103671 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUUCGcGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUaUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112785 0.67 0.9998
Target:  5'- gAACGUGuCUGACUUUuuauagUCGUGGACUa- -3'
miRNA:   3'- -UUGCACcGGCUGAAA------AGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 56126 0.67 0.999741
Target:  5'- gAACGUGuCUGACUUUUCGUAAc---- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 10683 0.68 0.999574
Target:  5'- aAACuUGuCUGACUUUUCAUGAACUg- -3'
miRNA:   3'- -UUGcACcGGCUGAAAAGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 54594 0.68 0.999461
Target:  5'- gAACcUGGCCGACUUUUUuuuGACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGuauUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26107 0.68 0.999322
Target:  5'- gAACcUGGCCGACUUUUUGUGcucaAACg-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAU----UUGaaa -5'
11672 5' -45.2 NC_003102.1 + 16987 0.68 0.999307
Target:  5'- uAACGUGGCCGAUccuacaaUUUUUaAUAAACg-- -3'
miRNA:   3'- -UUGCACCGGCUG-------AAAAG-UAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 42663 0.69 0.999153
Target:  5'- gAACccGGCUGACUUUUCAUuAACa-- -3'
miRNA:   3'- -UUGcaCCGGCUGAAAAGUAuUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 67210 0.69 0.999153
Target:  5'- gAACcUGGCCGACUUUUCGa------- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUauuugaaa -5'
11672 5' -45.2 NC_003102.1 + 104636 0.69 0.99895
Target:  5'- gAACcUGGCCGACUUUUUGUuGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 26193 0.69 0.99895
Target:  5'- gAACGUGuCUGACUUUUCGUuAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAuUUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.