miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 5' -45.2 NC_003102.1 + 76479 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUuGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 121760 0.75 0.94415
Target:  5'- gAACGUGuuUGACUUUUCAUAAACg-- -3'
miRNA:   3'- -UUGCACcgGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 26267 0.75 0.94415
Target:  5'- gAACcUGGCCGACUUUUCGUGuuuaagccACUUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-------UGAAA- -5'
11672 5' -45.2 NC_003102.1 + 10732 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUCGU--GCUg- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAaa -5'
11672 5' -45.2 NC_003102.1 + 42895 0.75 0.933599
Target:  5'- gAACcUGGCCGACUUUUUGUGAAUa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 67113 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCAUAucACa-- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUu-UGaaa -5'
11672 5' -45.2 NC_003102.1 + 67398 0.76 0.921869
Target:  5'- gAACcUGGCCGACUUUUCGUAAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 137448 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137371 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 137295 0.76 0.915561
Target:  5'- aAACGUGuCUGACUUUUCGUGGACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 103657 0.76 0.915561
Target:  5'- gAACcUGGCCGACUcUUCAUAGAUUg- -3'
miRNA:   3'- -UUGcACCGGCUGAaAAGUAUUUGAaa -5'
11672 5' -45.2 NC_003102.1 + 25968 0.76 0.915561
Target:  5'- gAACcUGGCCGACUUUUCGUGAu---- -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAUUugaaa -5'
11672 5' -45.2 NC_003102.1 + 137192 0.76 0.908959
Target:  5'- gAACGUGGCCaACUUUUCGUGuACa-- -3'
miRNA:   3'- -UUGCACCGGcUGAAAAGUAUuUGaaa -5'
11672 5' -45.2 NC_003102.1 + 121956 0.76 0.908959
Target:  5'- gAACGUGGCCGACUugUUUCGauuACUa- -3'
miRNA:   3'- -UUGCACCGGCUGA--AAAGUauuUGAaa -5'
11672 5' -45.2 NC_003102.1 + 26579 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 112701 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 104482 0.76 0.908959
Target:  5'- gAACGUGuCUGACUUUUCGUGGACg-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 121893 0.77 0.894886
Target:  5'- gAACcUGGCCGACUUUUCGU--ACUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5'
11672 5' -45.2 NC_003102.1 + 56218 0.77 0.887421
Target:  5'- gAACGUGuCUGACUUUUCGUAAACa-- -3'
miRNA:   3'- -UUGCACcGGCUGAAAAGUAUUUGaaa -5'
11672 5' -45.2 NC_003102.1 + 10815 0.77 0.887421
Target:  5'- uAACcUGGCCGACUUUUCGU--GCUUa -3'
miRNA:   3'- -UUGcACCGGCUGAAAAGUAuuUGAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.