Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11673 | 3' | -46.1 | NC_003102.1 | + | 36096 | 0.72 | 0.981515 |
Target: 5'- cGAACCUGUCUGACUUUUUa------ -3' miRNA: 3'- aUUUGGACAGACUGAAAAGcacagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 42728 | 0.8 | 0.715783 |
Target: 5'- -cAACUUGUCUGACUUUUCGUGa--- -3' miRNA: 3'- auUUGGACAGACUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 42761 | 0.68 | 0.998755 |
Target: 5'- uUGAACgC-GUCUGACUUUUCGaUGUUa- -3' miRNA: 3'- -AUUUG-GaCAGACUGAAAAGC-ACAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 55128 | 0.67 | 0.999802 |
Target: 5'- aUGAACUUGUUaGACUUUUUGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 55319 | 0.71 | 0.990395 |
Target: 5'- aUAAACUUGUUgGACUUUUCGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 55411 | 0.67 | 0.999802 |
Target: 5'- aUGAACUUGUUaGACUUUUUGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 55443 | 0.67 | 0.999802 |
Target: 5'- aUAAAUCUGUUaGACUUUUUGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 55475 | 0.67 | 0.999802 |
Target: 5'- aUAAAUCUGUUaGACUUUUUGUGa--- -3' miRNA: 3'- -AUUUGGACAGaCUGAAAAGCACagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 55787 | 0.67 | 0.999745 |
Target: 5'- uUGAACUUGUCUGACgUUUCGcuaacaUGuUCUg -3' miRNA: 3'- -AUUUGGACAGACUGaAAAGC------AC-AGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 56128 | 0.75 | 0.920354 |
Target: 5'- uUGAACgUGUCUGACUUUUCGUa---- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGCAcagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 56220 | 0.75 | 0.926334 |
Target: 5'- cUGAACgUGUCUGACUUUUCGUa---- -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGCAcagag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 66979 | 0.75 | 0.926334 |
Target: 5'- cAAACgUGUCUGACUUUUCGUuaacuaCUCu -3' miRNA: 3'- aUUUGgACAGACUGAAAAGCAca----GAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 67076 | 0.69 | 0.998154 |
Target: 5'- cAAACgUGUCUGACUUUUUGcaaacaUGUUUa -3' miRNA: 3'- aUUUGgACAGACUGAAAAGC------ACAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 67174 | 0.68 | 0.998987 |
Target: 5'- cGAACgUGUCUGACUUUUUGcaaacaUGUUa- -3' miRNA: 3'- aUUUGgACAGACUGAAAAGC------ACAGag -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 67264 | 0.7 | 0.996206 |
Target: 5'- cGAACgUGUCUGACUUUUUGcaaacaUGUUUa -3' miRNA: 3'- aUUUGgACAGACUGAAAAGC------ACAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 67399 | 0.68 | 0.998987 |
Target: 5'- cGAACCUGgCcGACUUUUCGUaauaaGUCaUCg -3' miRNA: 3'- aUUUGGACaGaCUGAAAAGCA-----CAG-AG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 89574 | 0.78 | 0.798935 |
Target: 5'- uUGAACgUGUCUGACUUUUCaUGUUUUa -3' miRNA: 3'- -AUUUGgACAGACUGAAAAGcACAGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 89642 | 1.1 | 0.018269 |
Target: 5'- uUAAACCUGUCUGACUUUUCGUGUCUCa -3' miRNA: 3'- -AUUUGGACAGACUGAAAAGCACAGAG- -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 97707 | 0.67 | 0.999802 |
Target: 5'- -cAACUUGUCUGACUUUUCauagacagGUUUg -3' miRNA: 3'- auUUGGACAGACUGAAAAGca------CAGAg -5' |
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11673 | 3' | -46.1 | NC_003102.1 | + | 97764 | 0.67 | 0.999802 |
Target: 5'- -cAACUUGUCUGACUUUUCauagacggGUUUg -3' miRNA: 3'- auUUGGACAGACUGAAAAGca------CAGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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