miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 3' -46.1 NC_003102.1 + 97820 0.67 0.999802
Target:  5'- -cAACUUGUCUGACUUUUCauagacggGUUUg -3'
miRNA:   3'- auUUGGACAGACUGAAAAGca------CAGAg -5'
11673 3' -46.1 NC_003102.1 + 97877 0.68 0.999181
Target:  5'- -cAACUUGUCUGACUUUUCaUGa--- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGcACagag -5'
11673 3' -46.1 NC_003102.1 + 103479 0.79 0.789048
Target:  5'- cGAACCUGgCcGACUUUUCGUG-CUCa -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCACaGAG- -5'
11673 3' -46.1 NC_003102.1 + 103612 0.69 0.998154
Target:  5'- -uAACgUGUCUGACUUUUCGacGUUa- -3'
miRNA:   3'- auUUGgACAGACUGAAAAGCa-CAGag -5'
11673 3' -46.1 NC_003102.1 + 103673 0.71 0.987369
Target:  5'- uUGAACgUGUCUGACUUUUCGcGg--- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGCaCagag -5'
11673 3' -46.1 NC_003102.1 + 103732 0.77 0.854106
Target:  5'- uUAAACgUGUCUGACUUUUCGcggacaUGUCg- -3'
miRNA:   3'- -AUUUGgACAGACUGAAAAGC------ACAGag -5'
11673 3' -46.1 NC_003102.1 + 104483 0.81 0.671778
Target:  5'- cGAACgUGUCUGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 104649 0.71 0.988963
Target:  5'- cGAACgUGUCaGACUUUUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 112471 0.66 0.999934
Target:  5'- cGAACCUGgCUGACUUUUCa------ -3'
miRNA:   3'- aUUUGGACaGACUGAAAAGcacagag -5'
11673 3' -46.1 NC_003102.1 + 112652 0.9 0.267287
Target:  5'- cGAACCUGUCUGACUUUUCGUGa--- -3'
miRNA:   3'- aUUUGGACAGACUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 112702 0.86 0.444908
Target:  5'- cGAACgUGUCUGACUUUUCGUGgacgcgagCUCg -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCACa-------GAG- -5'
11673 3' -46.1 NC_003102.1 + 112786 0.7 0.996206
Target:  5'- cGAACgUGUCUGACUUUuuauagUCGUGg--- -3'
miRNA:   3'- aUUUGgACAGACUGAAA------AGCACagag -5'
11673 3' -46.1 NC_003102.1 + 121680 0.83 0.571536
Target:  5'- cGAACgUGUCUGACUUUUCGUaGUCa- -3'
miRNA:   3'- aUUUGgACAGACUGAAAAGCA-CAGag -5'
11673 3' -46.1 NC_003102.1 + 121814 0.66 0.999884
Target:  5'- cGAACCUGgCcGACUUUUCGauaaGUCaUCg -3'
miRNA:   3'- aUUUGGACaGaCUGAAAAGCa---CAG-AG- -5'
11673 3' -46.1 NC_003102.1 + 132090 0.71 0.990395
Target:  5'- aUAAACUUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132193 0.73 0.970816
Target:  5'- -uAACUUGUCUGACUUUUCGUu---- -3'
miRNA:   3'- auUUGGACAGACUGAAAAGCAcagag -5'
11673 3' -46.1 NC_003102.1 + 132669 0.7 0.995517
Target:  5'- aUGAACCUGUUauACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGacUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132701 0.77 0.862517
Target:  5'- aUGAACCUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132780 0.77 0.862517
Target:  5'- aUGAACCUGUUaGACUUUUCGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5'
11673 3' -46.1 NC_003102.1 + 132969 0.67 0.999802
Target:  5'- aUGAACUUGUUaGACUUUUUGUGa--- -3'
miRNA:   3'- -AUUUGGACAGaCUGAAAAGCACagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.