miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11675 3' -52.7 NC_003102.1 + 81380 0.66 0.978731
Target:  5'- -cGAcGCGUCgucugCGACGGCgaccgcGUCGAcUUCg -3'
miRNA:   3'- uaCUuCGCAGa----GCUGCCG------UAGCU-AGG- -5'
11675 3' -52.7 NC_003102.1 + 71637 0.66 0.978731
Target:  5'- -aGAGGCGgcaaCGGCGGUgacguugaAUCGAUCg -3'
miRNA:   3'- uaCUUCGCaga-GCUGCCG--------UAGCUAGg -5'
11675 3' -52.7 NC_003102.1 + 62036 0.66 0.978497
Target:  5'- uUGAucacuacGGCGa--CGACGGCAUC-AUCCg -3'
miRNA:   3'- uACU-------UCGCagaGCUGCCGUAGcUAGG- -5'
11675 3' -52.7 NC_003102.1 + 18469 0.66 0.973667
Target:  5'- -cGAcGGCGgcaggUUCGuCGGCGUCGG-CCa -3'
miRNA:   3'- uaCU-UCGCa----GAGCuGCCGUAGCUaGG- -5'
11675 3' -52.7 NC_003102.1 + 49546 0.66 0.97083
Target:  5'- ----cGcCGUCgCGACGGCuUCGAUCg -3'
miRNA:   3'- uacuuC-GCAGaGCUGCCGuAGCUAGg -5'
11675 3' -52.7 NC_003102.1 + 40331 0.66 0.96778
Target:  5'- -cGAAcGCGccgUUCGGCGGCAUCaugguGAUCg -3'
miRNA:   3'- uaCUU-CGCa--GAGCUGCCGUAG-----CUAGg -5'
11675 3' -52.7 NC_003102.1 + 88892 0.66 0.964511
Target:  5'- -aGAAGCcgccgaGUCg-GACGGUGUCGuGUCCg -3'
miRNA:   3'- uaCUUCG------CAGagCUGCCGUAGC-UAGG- -5'
11675 3' -52.7 NC_003102.1 + 134368 0.67 0.961016
Target:  5'- uGUGuAGCGgcggCGGCGGCGgcggCGGUCg -3'
miRNA:   3'- -UACuUCGCaga-GCUGCCGUa---GCUAGg -5'
11675 3' -52.7 NC_003102.1 + 135518 0.67 0.952919
Target:  5'- -gGAaucGGCGUCgggguuuuugCGAUGGCGUCGuugcgcuAUCCu -3'
miRNA:   3'- uaCU---UCGCAGa---------GCUGCCGUAGC-------UAGG- -5'
11675 3' -52.7 NC_003102.1 + 75749 0.67 0.949127
Target:  5'- gAUGAuGGUGUCggGACGGaCAUCGAaaCCg -3'
miRNA:   3'- -UACU-UCGCAGagCUGCC-GUAGCUa-GG- -5'
11675 3' -52.7 NC_003102.1 + 137007 0.67 0.949127
Target:  5'- uUGggGCGccgCUgGugGGCcgaaaacaugAUCGAUUCg -3'
miRNA:   3'- uACuuCGCa--GAgCugCCG----------UAGCUAGG- -5'
11675 3' -52.7 NC_003102.1 + 35751 0.67 0.94468
Target:  5'- gAUGAcaguucucgcGGCGauaUCUCGuCGGCuUCGAUCa -3'
miRNA:   3'- -UACU----------UCGC---AGAGCuGCCGuAGCUAGg -5'
11675 3' -52.7 NC_003102.1 + 31698 0.67 0.94468
Target:  5'- ----cGCGUCUCGACacGCG-CGAUCUg -3'
miRNA:   3'- uacuuCGCAGAGCUGc-CGUaGCUAGG- -5'
11675 3' -52.7 NC_003102.1 + 110373 0.68 0.935045
Target:  5'- -gGgcGCGUCcacgaucaugUCGACGGCGU--GUCCg -3'
miRNA:   3'- uaCuuCGCAG----------AGCUGCCGUAgcUAGG- -5'
11675 3' -52.7 NC_003102.1 + 72706 0.68 0.929851
Target:  5'- aAUGGuAGCGgcggCGGCGGCAaCGAUuCCg -3'
miRNA:   3'- -UACU-UCGCaga-GCUGCCGUaGCUA-GG- -5'
11675 3' -52.7 NC_003102.1 + 37392 0.68 0.927704
Target:  5'- uUGAAGCGUCUUGgacauuaGCGcagaaacaugaucaGCGUCGAcgaUCCg -3'
miRNA:   3'- uACUUCGCAGAGC-------UGC--------------CGUAGCU---AGG- -5'
11675 3' -52.7 NC_003102.1 + 116696 0.68 0.918711
Target:  5'- -cGAAGCcg--UGACGGUGUCGAUCa -3'
miRNA:   3'- uaCUUCGcagaGCUGCCGUAGCUAGg -5'
11675 3' -52.7 NC_003102.1 + 111582 0.69 0.906568
Target:  5'- -gGAGGCGgcggCGGCGGCGUC-AUCa -3'
miRNA:   3'- uaCUUCGCaga-GCUGCCGUAGcUAGg -5'
11675 3' -52.7 NC_003102.1 + 131643 0.69 0.88651
Target:  5'- -cGAGGCGUgUgCGACuGUggCGAUCCg -3'
miRNA:   3'- uaCUUCGCAgA-GCUGcCGuaGCUAGG- -5'
11675 3' -52.7 NC_003102.1 + 117896 0.7 0.871949
Target:  5'- -gGAGGCGUCcagUCGACcgacgaGGCcAUCGAUgCCg -3'
miRNA:   3'- uaCUUCGCAG---AGCUG------CCG-UAGCUA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.