Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11675 | 3' | -52.7 | NC_003102.1 | + | 81380 | 0.66 | 0.978731 |
Target: 5'- -cGAcGCGUCgucugCGACGGCgaccgcGUCGAcUUCg -3' miRNA: 3'- uaCUuCGCAGa----GCUGCCG------UAGCU-AGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 71637 | 0.66 | 0.978731 |
Target: 5'- -aGAGGCGgcaaCGGCGGUgacguugaAUCGAUCg -3' miRNA: 3'- uaCUUCGCaga-GCUGCCG--------UAGCUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 62036 | 0.66 | 0.978497 |
Target: 5'- uUGAucacuacGGCGa--CGACGGCAUC-AUCCg -3' miRNA: 3'- uACU-------UCGCagaGCUGCCGUAGcUAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 18469 | 0.66 | 0.973667 |
Target: 5'- -cGAcGGCGgcaggUUCGuCGGCGUCGG-CCa -3' miRNA: 3'- uaCU-UCGCa----GAGCuGCCGUAGCUaGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 49546 | 0.66 | 0.97083 |
Target: 5'- ----cGcCGUCgCGACGGCuUCGAUCg -3' miRNA: 3'- uacuuC-GCAGaGCUGCCGuAGCUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 40331 | 0.66 | 0.96778 |
Target: 5'- -cGAAcGCGccgUUCGGCGGCAUCaugguGAUCg -3' miRNA: 3'- uaCUU-CGCa--GAGCUGCCGUAG-----CUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 88892 | 0.66 | 0.964511 |
Target: 5'- -aGAAGCcgccgaGUCg-GACGGUGUCGuGUCCg -3' miRNA: 3'- uaCUUCG------CAGagCUGCCGUAGC-UAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 134368 | 0.67 | 0.961016 |
Target: 5'- uGUGuAGCGgcggCGGCGGCGgcggCGGUCg -3' miRNA: 3'- -UACuUCGCaga-GCUGCCGUa---GCUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 135518 | 0.67 | 0.952919 |
Target: 5'- -gGAaucGGCGUCgggguuuuugCGAUGGCGUCGuugcgcuAUCCu -3' miRNA: 3'- uaCU---UCGCAGa---------GCUGCCGUAGC-------UAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 75749 | 0.67 | 0.949127 |
Target: 5'- gAUGAuGGUGUCggGACGGaCAUCGAaaCCg -3' miRNA: 3'- -UACU-UCGCAGagCUGCC-GUAGCUa-GG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 137007 | 0.67 | 0.949127 |
Target: 5'- uUGggGCGccgCUgGugGGCcgaaaacaugAUCGAUUCg -3' miRNA: 3'- uACuuCGCa--GAgCugCCG----------UAGCUAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 35751 | 0.67 | 0.94468 |
Target: 5'- gAUGAcaguucucgcGGCGauaUCUCGuCGGCuUCGAUCa -3' miRNA: 3'- -UACU----------UCGC---AGAGCuGCCGuAGCUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 31698 | 0.67 | 0.94468 |
Target: 5'- ----cGCGUCUCGACacGCG-CGAUCUg -3' miRNA: 3'- uacuuCGCAGAGCUGc-CGUaGCUAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 110373 | 0.68 | 0.935045 |
Target: 5'- -gGgcGCGUCcacgaucaugUCGACGGCGU--GUCCg -3' miRNA: 3'- uaCuuCGCAG----------AGCUGCCGUAgcUAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 72706 | 0.68 | 0.929851 |
Target: 5'- aAUGGuAGCGgcggCGGCGGCAaCGAUuCCg -3' miRNA: 3'- -UACU-UCGCaga-GCUGCCGUaGCUA-GG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 37392 | 0.68 | 0.927704 |
Target: 5'- uUGAAGCGUCUUGgacauuaGCGcagaaacaugaucaGCGUCGAcgaUCCg -3' miRNA: 3'- uACUUCGCAGAGC-------UGC--------------CGUAGCU---AGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 116696 | 0.68 | 0.918711 |
Target: 5'- -cGAAGCcg--UGACGGUGUCGAUCa -3' miRNA: 3'- uaCUUCGcagaGCUGCCGUAGCUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 111582 | 0.69 | 0.906568 |
Target: 5'- -gGAGGCGgcggCGGCGGCGUC-AUCa -3' miRNA: 3'- uaCUUCGCaga-GCUGCCGUAGcUAGg -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 131643 | 0.69 | 0.88651 |
Target: 5'- -cGAGGCGUgUgCGACuGUggCGAUCCg -3' miRNA: 3'- uaCUUCGCAgA-GCUGcCGuaGCUAGG- -5' |
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11675 | 3' | -52.7 | NC_003102.1 | + | 117896 | 0.7 | 0.871949 |
Target: 5'- -gGAGGCGUCcagUCGACcgacgaGGCcAUCGAUgCCg -3' miRNA: 3'- uaCUUCGCAG---AGCUG------CCG-UAGCUA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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