Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11677 | 5' | -50 | NC_003102.1 | + | 26366 | 0.68 | 0.987713 |
Target: 5'- aGUCCAAacauguuaacgaaaaGUCaGACACGUUCaaaucgaauuUGGCCGa -3' miRNA: 3'- -CGGGUU---------------UAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 54620 | 0.66 | 0.996476 |
Target: 5'- uGCUaaAAGUCgGACACGUUCaaaucgaaccUGGCCGa -3' miRNA: 3'- -CGGg-UUUAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 16566 | 0.66 | 0.995152 |
Target: 5'- cGCCCGucgucguAUUUGAUAauUUCacaauUAGCCGCg -3' miRNA: 3'- -CGGGUu------UAGACUGUgcAAG-----AUCGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 93949 | 0.66 | 0.995152 |
Target: 5'- aUCCAGuAUCUGGCGCGgaCUcuUCGCa -3' miRNA: 3'- cGGGUU-UAGACUGUGCaaGAucGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 26088 | 0.67 | 0.993824 |
Target: 5'- uGCUCAAacgcgucuacaaaaaGUCaGACACGUUCagaucaaaccUGGCCGa -3' miRNA: 3'- -CGGGUU---------------UAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 21029 | 0.67 | 0.99345 |
Target: 5'- cCCCAAGUCgacucGGCucGCGUUCUAGaCGa -3' miRNA: 3'- cGGGUUUAGa----CUG--UGCAAGAUCgGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 81474 | 0.67 | 0.992436 |
Target: 5'- uGCCCAGAUC-GAUcacucgGCGUagCUgAGCUGCc -3' miRNA: 3'- -CGGGUUUAGaCUG------UGCAa-GA-UCGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 127354 | 0.67 | 0.9913 |
Target: 5'- cGCgCAGA-CUGGCGC-UUCgaauggacgUGGCCGCg -3' miRNA: 3'- -CGgGUUUaGACUGUGcAAG---------AUCGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 23881 | 0.67 | 0.988627 |
Target: 5'- aGCCC------GACACuGUUCUcGGCCGCu -3' miRNA: 3'- -CGGGuuuagaCUGUG-CAAGA-UCGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 67424 | 0.66 | 0.996476 |
Target: 5'- uGCaaaAAGUCaGACACGUUCgaaucgaaccUGGCCGa -3' miRNA: 3'- -CGgg-UUUAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 10765 | 0.68 | 0.983474 |
Target: 5'- aCCCGAcuacgaaaaGUCaGACACGUUCgauucgaaccUGGCCGa -3' miRNA: 3'- cGGGUU---------UAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 47322 | 0.68 | 0.981413 |
Target: 5'- cGCCCAAGuuUCUGaACACGaucgauauaUUCUuGUCGUg -3' miRNA: 3'- -CGGGUUU--AGAC-UGUGC---------AAGAuCGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 90055 | 0.69 | 0.964832 |
Target: 5'- cGCCCGA---UGACAUccugUCUGGCgGCg -3' miRNA: 3'- -CGGGUUuagACUGUGca--AGAUCGgCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 26741 | 0.7 | 0.957515 |
Target: 5'- cGUCCAcgaaaAGUCaGACACGUUCgaaucgaacgUGGCCGa -3' miRNA: 3'- -CGGGU-----UUAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 128761 | 0.7 | 0.953492 |
Target: 5'- aGCCgGucUCgaGACGCGUcugUCUAGCgCGCu -3' miRNA: 3'- -CGGgUuuAGa-CUGUGCA---AGAUCG-GCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 63263 | 0.73 | 0.862495 |
Target: 5'- aCUCGAGUUUGACACGaucgaUCUGGaCCGUg -3' miRNA: 3'- cGGGUUUAGACUGUGCa----AGAUC-GGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 103203 | 1.14 | 0.004693 |
Target: 5'- cGCCCAAAUCUGACACGUUCUAGCCGCc -3' miRNA: 3'- -CGGGUUUAGACUGUGCAAGAUCGGCG- -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 67334 | 0.66 | 0.996476 |
Target: 5'- uGCaaaAAGUCaGACACGUUCgaaucgaaccUGGCCGa -3' miRNA: 3'- -CGgg-UUUAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 10685 | 0.66 | 0.997017 |
Target: 5'- aGCCaugucuacgaaAAGUCaGACACGUUCaaaucaaaccUGGCCGa -3' miRNA: 3'- -CGGg----------UUUAGaCUGUGCAAG----------AUCGGCg -5' |
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11677 | 5' | -50 | NC_003102.1 | + | 104487 | 0.79 | 0.574377 |
Target: 5'- aCCCAcgaaaAGUCUGACACGUUCguuucgaaccUGGCCGa -3' miRNA: 3'- cGGGU-----UUAGACUGUGCAAG----------AUCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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