Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11678 | 3' | -49.5 | NC_003102.1 | + | 119070 | 0.71 | 0.913599 |
Target: 5'- gUCGUGAUCGcGguGGCGU--GCUGUUg -3' miRNA: 3'- aAGCGUUAGC-CguCUGCAuuUGACAG- -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 106146 | 1.08 | 0.010951 |
Target: 5'- aUUCGCAAUCGGCAGACGUAAACUGUCu -3' miRNA: 3'- -AAGCGUUAGCCGUCUGCAUUUGACAG- -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 93413 | 0.66 | 0.996389 |
Target: 5'- -aCGUAAUUGGCGGGgaacaGUAgaAACUGUUc -3' miRNA: 3'- aaGCGUUAGCCGUCUg----CAU--UUGACAG- -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 92593 | 0.66 | 0.995007 |
Target: 5'- aUgGCGAUCGGCugguuuGugGUGAACg--- -3' miRNA: 3'- aAgCGUUAGCCGu-----CugCAUUUGacag -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 53547 | 0.69 | 0.962946 |
Target: 5'- cUUCGUAGUCGGCAGGCucgcGGAC-GUUg -3' miRNA: 3'- -AAGCGUUAGCCGUCUGca--UUUGaCAG- -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 46351 | 0.66 | 0.995007 |
Target: 5'- gUCGacuUCGGaGGACGU--GCUGUCu -3' miRNA: 3'- aAGCguuAGCCgUCUGCAuuUGACAG- -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 23709 | 0.67 | 0.988142 |
Target: 5'- gUUCGagugUGGCGGGCGUAGGCggcgcGUCc -3' miRNA: 3'- -AAGCguuaGCCGUCUGCAUUUGa----CAG- -5' |
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11678 | 3' | -49.5 | NC_003102.1 | + | 18473 | 0.66 | 0.993222 |
Target: 5'- aUCGCGAcggCGGCAGGuuCGUcgGC-GUCg -3' miRNA: 3'- aAGCGUUa--GCCGUCU--GCAuuUGaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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