miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 55272 0.7 0.999897
Target:  5'- uUUAUGAACAUGUUUAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 133213 0.7 0.999864
Target:  5'- uUCAUGAACAUGUUCAUaAAucGcugaCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUuuCa---GGU- -5'
11682 3' -43.5 NC_003102.1 + 137011 0.7 0.999864
Target:  5'- aCGUGGacuaauuuaACAUGUaCACGAAAAGUuggCCAc -3'
miRNA:   3'- aGUACU---------UGUACAaGUGCUUUUCA---GGU- -5'
11682 3' -43.5 NC_003102.1 + 69587 0.7 0.999823
Target:  5'- gUUAUGAACGUGUUU-CGGAAAGaaucgucucguUCCAu -3'
miRNA:   3'- -AGUACUUGUACAAGuGCUUUUC-----------AGGU- -5'
11682 3' -43.5 NC_003102.1 + 27801 0.71 0.999703
Target:  5'- -aAUGcAACAUGUUCGCGAcgcGUCUAc -3'
miRNA:   3'- agUAC-UUGUACAAGUGCUuuuCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55115 0.71 0.999394
Target:  5'- -aAUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132956 0.71 0.999394
Target:  5'- -aAUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 95869 0.71 0.999394
Target:  5'- --uUGAACAUGUUCACGGugccgCCGc -3'
miRNA:   3'- aguACUUGUACAAGUGCUuuucaGGU- -5'
11682 3' -43.5 NC_003102.1 + 55242 0.71 0.999243
Target:  5'- -aAUGAACAUGUUCAUGAAcuuGUUgGa -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgU- -5'
11682 3' -43.5 NC_003102.1 + 55300 0.71 0.999243
Target:  5'- aCA--AACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- aGUacUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54954 0.71 0.999243
Target:  5'- aCGUGAACAUGUUUAUGAAcauGUUa- -3'
miRNA:   3'- aGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 54673 0.72 0.998839
Target:  5'- -aGUGAACAUGUUCAUGAAcuuGUUg- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 104467 0.72 0.998547
Target:  5'- uUCGUGGACGUGUcgauggcUUAuCGAAAAGUCa- -3'
miRNA:   3'- -AGUACUUGUACA-------AGU-GCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 55629 0.72 0.998264
Target:  5'- uUUGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 54846 0.72 0.998264
Target:  5'- uUUGUGAACAUGUUCAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 55892 0.72 0.998124
Target:  5'- uUCAUGAACAUGUUCAaauauuuUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUgcuuuucAGGU- -5'
11682 3' -43.5 NC_003102.1 + 71372 0.73 0.998051
Target:  5'- aUCAuguUGAACAUGUUCGCGuuuuugacaaccgaaGAGGGUgCCGa -3'
miRNA:   3'- -AGU---ACUUGUACAAGUGC---------------UUUUCA-GGU- -5'
11682 3' -43.5 NC_003102.1 + 137116 0.73 0.996911
Target:  5'- aCGUGuucgagaGACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aGUAC-------UUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137569 0.73 0.996385
Target:  5'- uUUAUGAACAUGUUUAUGAAcauGUUCu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGGu -5'
11682 3' -43.5 NC_003102.1 + 3272 0.73 0.996385
Target:  5'- -gAUGcAACAUGUUCuuGAGAAaGUCCAa -3'
miRNA:   3'- agUAC-UUGUACAAGugCUUUU-CAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.