miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 55919 0.68 0.999994
Target:  5'- ----cAAUAUGUUCGUGAAAAGUCUAa -3'
miRNA:   3'- aguacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 120761 0.68 0.999992
Target:  5'- ---cGAACGUGcUUCcCGAcGAAGUCCGa -3'
miRNA:   3'- aguaCUUGUAC-AAGuGCU-UUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 42502 0.68 0.999992
Target:  5'- aUCAauuACAUGUUCaAUGAAAAGUCa- -3'
miRNA:   3'- -AGUacuUGUACAAG-UGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137654 0.68 0.999989
Target:  5'- ---cGAACAUGUUUAUGAAcauGUCUg -3'
miRNA:   3'- aguaCUUGUACAAGUGCUUuu-CAGGu -5'
11682 3' -43.5 NC_003102.1 + 55738 0.68 0.999984
Target:  5'- --uUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- aguACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 42564 0.68 0.999984
Target:  5'- -------aAUGUUCACGAAAAGUCa- -3'
miRNA:   3'- aguacuugUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 55399 0.68 0.999984
Target:  5'- --uUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- aguACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132349 0.68 0.999982
Target:  5'- uUCAUGAACAUGUUCAaacuuuuagauuuuUGAGAcaaaauuuAG-CCAg -3'
miRNA:   3'- -AGUACUUGUACAAGU--------------GCUUU--------UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 132468 0.68 0.999982
Target:  5'- uUCAUGAACAUGUUCAaacuuuuagauuuuUGAGAcaaaauuuAG-CCAg -3'
miRNA:   3'- -AGUACUUGUACAAGU--------------GCUUU--------UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 15663 0.68 0.999978
Target:  5'- uUCAaauUGAACGUGUgCACGAGcAAGUUgAa -3'
miRNA:   3'- -AGU---ACUUGUACAaGUGCUU-UUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 10920 0.68 0.999978
Target:  5'- cUUAUuAACAUGUUCACaAAAAGUCa- -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 93777 0.68 0.999978
Target:  5'- --uUGAGCAU----GCGAAGAGUCCGc -3'
miRNA:   3'- aguACUUGUAcaagUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132194 0.68 0.999978
Target:  5'- --uUGAACAUGUUCAUGAAcuuGUUgGa -3'
miRNA:   3'- aguACUUGUACAAGUGCUUuu-CAGgU- -5'
11682 3' -43.5 NC_003102.1 + 137204 0.68 0.999978
Target:  5'- ----uAACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aguacUUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137281 0.68 0.999978
Target:  5'- ----uAACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aguacUUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 32744 0.68 0.999978
Target:  5'- --cUGaAGCAUGUUUAUGAAAAGggCCGc -3'
miRNA:   3'- aguAC-UUGUACAAGUGCUUUUCa-GGU- -5'
11682 3' -43.5 NC_003102.1 + 14303 0.69 0.999958
Target:  5'- cUCGUGAGCGg--UUACGAAAAaaauaaacGUCCGa -3'
miRNA:   3'- -AGUACUUGUacaAGUGCUUUU--------CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132314 0.69 0.999941
Target:  5'- --uUGAACAUGUUCAUGAacuuguuggacuuGAAGUUgGa -3'
miRNA:   3'- aguACUUGUACAAGUGCU-------------UUUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 55272 0.7 0.999897
Target:  5'- uUUAUGAACAUGUUUAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132765 0.7 0.999897
Target:  5'- uUUAUGAACAUGUUUAUGAAccuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.