miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 54742 0.74 0.994074
Target:  5'- uUCGUGAACAUGUUUAUGAAcauguuAGaCCGu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUu-----UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 54828 0.84 0.724831
Target:  5'- uUCAUGAACAUGUUCACuAAAAGUUgGa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 54846 0.72 0.998264
Target:  5'- uUUGUGAACAUGUUCAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 54899 0.92 0.356724
Target:  5'- uUCAUaAACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54939 0.88 0.546167
Target:  5'- uUCAUGAACAUGUUUACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54954 0.71 0.999243
Target:  5'- aCGUGAACAUGUUUAUGAAcauGUUa- -3'
miRNA:   3'- aGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 54971 0.88 0.546167
Target:  5'- uUCAUGAACAUGUUUACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54985 0.75 0.990699
Target:  5'- uUCAUGAACAUGUUUAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 55003 0.93 0.331292
Target:  5'- uUCAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55035 0.93 0.331292
Target:  5'- uUCAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55067 0.88 0.546167
Target:  5'- uUUAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55115 0.71 0.999394
Target:  5'- -aAUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 55143 0.88 0.53521
Target:  5'- uUCAUaAACAUGUUCAUGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55173 0.67 0.999997
Target:  5'- aCA--AACAUGUUCACuaAAAAGUCUAa -3'
miRNA:   3'- aGUacUUGUACAAGUGc-UUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55242 0.71 0.999243
Target:  5'- -aAUGAACAUGUUCAUGAAcuuGUUgGa -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgU- -5'
11682 3' -43.5 NC_003102.1 + 55271 0.76 0.979587
Target:  5'- uUCAUGAACAUGUUCAUuAAAAaUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUcAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55272 0.7 0.999897
Target:  5'- uUUAUGAACAUGUUUAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 55300 0.71 0.999243
Target:  5'- aCA--AACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- aGUacUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55398 0.81 0.853739
Target:  5'- uUCAUGAACAUGUUCAUuAAAAaUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUcAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55399 0.68 0.999984
Target:  5'- --uUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- aguACUUGUACAAGUGCUUuu-CAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.