miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 26976 0.85 0.669435
Target:  5'- gCA--AACAUGUUCAUGAAAAGUCCAa -3'
miRNA:   3'- aGUacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 133016 0.85 0.691787
Target:  5'- aCA--AACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- aGUacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132777 0.85 0.713897
Target:  5'- -aAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- agUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54828 0.84 0.724831
Target:  5'- uUCAUGAACAUGUUCACuAAAAGUUgGa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 27068 0.84 0.757002
Target:  5'- aCAUGuucacaAACAUGUUCACGAAAAGUCa- -3'
miRNA:   3'- aGUAC------UUGUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 132416 0.83 0.777801
Target:  5'- uUUAUaAACAUGUUCAUGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132647 0.83 0.777801
Target:  5'- uUUAUaAACAUGUUCAUGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132297 0.83 0.777801
Target:  5'- uUUAUaAACAUGUUCAUGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 42622 0.82 0.817401
Target:  5'- --uUGAACAUGUUCAUGAAAAGUUgGa -3'
miRNA:   3'- aguACUUGUACAAGUGCUUUUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 132843 0.82 0.836021
Target:  5'- uUCAUaAACAUGUUCACGAAAAGUauaaCAg -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAg---GU- -5'
11682 3' -43.5 NC_003102.1 + 132615 0.82 0.836021
Target:  5'- uUCAUaAACAUGUUCACGAAAAGUauaaCAg -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAg---GU- -5'
11682 3' -43.5 NC_003102.1 + 55398 0.81 0.853739
Target:  5'- uUCAUGAACAUGUUCAUuAAAAaUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUcAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55815 0.81 0.870484
Target:  5'- aCA--AACAUGUUCAUGAAAAGUCUAa -3'
miRNA:   3'- aGUacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55430 0.81 0.870484
Target:  5'- uUCAUaAACAUGUUCAUaAAAAGUCCAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 112724 0.8 0.907692
Target:  5'- gUCAgaacGAACAUGUUUAUGAAAAGUCa- -3'
miRNA:   3'- -AGUa---CUUGUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 132107 0.79 0.932359
Target:  5'- uUCGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132227 0.79 0.932359
Target:  5'- uUCGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132987 0.79 0.932359
Target:  5'- uUCAUaAACAUGUUCACuAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132355 0.79 0.932359
Target:  5'- uUCGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 26939 0.79 0.937801
Target:  5'- aCAUGuucacaAACAUGUUUACGAAAAGUCa- -3'
miRNA:   3'- aGUAC------UUGUACAAGUGCUUUUCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.