miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 132512 1.12 0.032034
Target:  5'- uUCAUGAACAUGUUCACGAAAAGUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132265 1.07 0.063786
Target:  5'- uUCAUGAACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55754 1.03 0.105068
Target:  5'- uUCAUGAACAUGUUUAUGAAAAGUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132384 0.95 0.270116
Target:  5'- uUCAUGAACAUGUUCACGAAAAGUaagUCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUUUCA---GGU- -5'
11682 3' -43.5 NC_003102.1 + 132811 0.93 0.323116
Target:  5'- uUCAUGAACAUGUUUACaAAAAGUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55003 0.93 0.331292
Target:  5'- uUCAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55035 0.93 0.331292
Target:  5'- uUCAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55494 0.93 0.348096
Target:  5'- uUUAUaAACAUGUUCACGAAAAGUCCAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132955 0.92 0.356724
Target:  5'- uUCAUaAACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132739 0.92 0.356724
Target:  5'- uUCAUaAACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54899 0.92 0.356724
Target:  5'- uUCAUaAACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 133112 0.9 0.461068
Target:  5'- uUCAUGAACAUGUUCAUuAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55143 0.88 0.53521
Target:  5'- uUCAUaAACAUGUUCAUGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54939 0.88 0.546167
Target:  5'- uUCAUGAACAUGUUUACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54971 0.88 0.546167
Target:  5'- uUCAUGAACAUGUUUACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55067 0.88 0.546167
Target:  5'- uUUAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55649 0.88 0.546167
Target:  5'- uUUAUGAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132875 0.87 0.579432
Target:  5'- uUUAUaAACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 55786 0.87 0.601852
Target:  5'- uUCAUGAACAUGUUCACaAAAAGUUUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 103618 0.86 0.658198
Target:  5'- cCAUcGACAUGUUCACGAAAAGUCgGa -3'
miRNA:   3'- aGUAcUUGUACAAGUGCUUUUCAGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.