miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 3272 0.73 0.996385
Target:  5'- -gAUGcAACAUGUUCuuGAGAAaGUCCAa -3'
miRNA:   3'- agUAC-UUGUACAAGugCUUUU-CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 10920 0.68 0.999978
Target:  5'- cUUAUuAACAUGUUCACaAAAAGUCa- -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 14303 0.69 0.999958
Target:  5'- cUCGUGAGCGg--UUACGAAAAaaauaaacGUCCGa -3'
miRNA:   3'- -AGUACUUGUacaAGUGCUUUU--------CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 15663 0.68 0.999978
Target:  5'- uUCAaauUGAACGUGUgCACGAGcAAGUUgAa -3'
miRNA:   3'- -AGU---ACUUGUACAaGUGCUU-UUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 17650 0.66 1
Target:  5'- -aGUGAuuguCGUGUUCACGAucAGaUCUg -3'
miRNA:   3'- agUACUu---GUACAAGUGCUuuUC-AGGu -5'
11682 3' -43.5 NC_003102.1 + 26008 0.76 0.984041
Target:  5'- aCAUGuAACcUGUUUACGAAAAGUCg- -3'
miRNA:   3'- aGUAC-UUGuACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 26307 0.74 0.994074
Target:  5'- gUCAUcGACAUGUUaACGAAAAGUCa- -3'
miRNA:   3'- -AGUAcUUGUACAAgUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 26906 0.67 0.999998
Target:  5'- uUCGUGAACAUGUUUGUGAAcauGUUUAu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 26939 0.79 0.937801
Target:  5'- aCAUGuucacaAACAUGUUUACGAAAAGUCa- -3'
miRNA:   3'- aGUAC------UUGUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 26976 0.85 0.669435
Target:  5'- gCA--AACAUGUUCAUGAAAAGUCCAa -3'
miRNA:   3'- aGUacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 27068 0.84 0.757002
Target:  5'- aCAUGuucacaAACAUGUUCACGAAAAGUCa- -3'
miRNA:   3'- aGUAC------UUGUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 27801 0.71 0.999703
Target:  5'- -aAUGcAACAUGUUCGCGAcgcGUCUAc -3'
miRNA:   3'- agUAC-UUGUACAAGUGCUuuuCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 32744 0.68 0.999978
Target:  5'- --cUGaAGCAUGUUUAUGAAAAGggCCGc -3'
miRNA:   3'- aguAC-UUGUACAAGUGCUUUUCa-GGU- -5'
11682 3' -43.5 NC_003102.1 + 37567 0.66 1
Target:  5'- --cUGAuCAUGUUUcuGCGcuAAGUCCAa -3'
miRNA:   3'- aguACUuGUACAAG--UGCuuUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 42502 0.68 0.999992
Target:  5'- aUCAauuACAUGUUCaAUGAAAAGUCa- -3'
miRNA:   3'- -AGUacuUGUACAAG-UGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 42564 0.68 0.999984
Target:  5'- -------aAUGUUCACGAAAAGUCa- -3'
miRNA:   3'- aguacuugUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 42622 0.82 0.817401
Target:  5'- --uUGAACAUGUUCAUGAAAAGUUgGa -3'
miRNA:   3'- aguACUUGUACAAGUGCUUUUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 53978 0.67 0.999997
Target:  5'- ---gGAACAcGUUCgACGgcAAGUCCGu -3'
miRNA:   3'- aguaCUUGUaCAAG-UGCuuUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 54673 0.72 0.998839
Target:  5'- -aGUGAACAUGUUCAUGAAcuuGUUg- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 54729 0.74 0.994074
Target:  5'- ---aGAuCAUGUUCAUGAAAAGUCa- -3'
miRNA:   3'- aguaCUuGUACAAGUGCUUUUCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.