miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 139060 0.74 0.994949
Target:  5'- aUUAUGAACAUGUUCGCauuauaaauuuGAAAAGUaUCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUG-----------CUUUUCA-GGU- -5'
11682 3' -43.5 NC_003102.1 + 138031 0.77 0.968012
Target:  5'- uUUAUGAACAUGUUCAUGAAcauGUUUAu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 137873 0.76 0.984041
Target:  5'- uUCAUGAACAUGUUCAUaAAcauGUCUAu -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUuu-CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 137654 0.68 0.999989
Target:  5'- ---cGAACAUGUUUAUGAAcauGUCUg -3'
miRNA:   3'- aguaCUUGUACAAGUGCUUuu-CAGGu -5'
11682 3' -43.5 NC_003102.1 + 137569 0.73 0.996385
Target:  5'- uUUAUGAACAUGUUUAUGAAcauGUUCu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGGu -5'
11682 3' -43.5 NC_003102.1 + 137433 0.66 1
Target:  5'- uUCGUGGACAUGUuaaauuuuuuacaagUCuacggcuAUGAAAAGUCg- -3'
miRNA:   3'- -AGUACUUGUACA---------------AG-------UGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137281 0.68 0.999978
Target:  5'- ----uAACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aguacUUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137229 0.66 1
Target:  5'- --uUGuACAUaUUUAUGAAAAGUCCGa -3'
miRNA:   3'- aguACuUGUAcAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 137204 0.68 0.999978
Target:  5'- ----uAACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aguacUUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137177 0.67 0.999999
Target:  5'- uUCGUGuACAUGUUaaauuagucCACGuAAAuuGGUCCAc -3'
miRNA:   3'- -AGUACuUGUACAA---------GUGC-UUU--UCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 137116 0.73 0.996911
Target:  5'- aCGUGuucgagaGACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aGUAC-------UUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137011 0.7 0.999864
Target:  5'- aCGUGGacuaauuuaACAUGUaCACGAAAAGUuggCCAc -3'
miRNA:   3'- aGUACU---------UGUACAaGUGCUUUUCA---GGU- -5'
11682 3' -43.5 NC_003102.1 + 133370 0.78 0.947821
Target:  5'- uUUAUGAACAUGUUCA-GAAAAGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUgCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 133213 0.7 0.999864
Target:  5'- uUCAUGAACAUGUUCAUaAAucGcugaCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUuuCa---GGU- -5'
11682 3' -43.5 NC_003102.1 + 133206 0.74 0.994949
Target:  5'- uUCA--AACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- -AGUacUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 133149 0.75 0.987716
Target:  5'- aCAUGuuaauaAACAUGUUCACaAAAAGUCUAa -3'
miRNA:   3'- aGUAC------UUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 133112 0.9 0.461068
Target:  5'- uUCAUGAACAUGUUCAUuAAAAGUCUAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 133016 0.85 0.691787
Target:  5'- aCA--AACAUGUUCACGAAAAGUCUAa -3'
miRNA:   3'- aGUacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132987 0.79 0.932359
Target:  5'- uUCAUaAACAUGUUCACuAAAAGUCUAa -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132956 0.71 0.999394
Target:  5'- -aAUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.