miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 54673 0.72 0.998839
Target:  5'- -aGUGAACAUGUUCAUGAAcuuGUUg- -3'
miRNA:   3'- agUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132458 0.74 0.994949
Target:  5'- uUCGUGAACAUGUUUAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132686 0.74 0.994949
Target:  5'- uUCGUGAACAUGUUUAUGAAccuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132797 0.74 0.994949
Target:  5'- uUCGUGAACAUGUUUAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 137569 0.73 0.996385
Target:  5'- uUUAUGAACAUGUUUAUGAAcauGUUCu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGGu -5'
11682 3' -43.5 NC_003102.1 + 137116 0.73 0.996911
Target:  5'- aCGUGuucgagaGACAUGUcCACGAAAAGUCa- -3'
miRNA:   3'- aGUAC-------UUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 71372 0.73 0.998051
Target:  5'- aUCAuguUGAACAUGUUCGCGuuuuugacaaccgaaGAGGGUgCCGa -3'
miRNA:   3'- -AGU---ACUUGUACAAGUGC---------------UUUUCA-GGU- -5'
11682 3' -43.5 NC_003102.1 + 54846 0.72 0.998264
Target:  5'- uUUGUGAACAUGUUCAUGAAcauGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 55629 0.72 0.998264
Target:  5'- uUUGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132582 0.74 0.994074
Target:  5'- uUCGUGAACAUGUUUAUGAAcauguuAGaCCGu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUu-----UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 54742 0.74 0.994074
Target:  5'- uUCGUGAACAUGUUUAUGAAcauguuAGaCCGu -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUu-----UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 103559 0.74 0.99196
Target:  5'- cCAUcGACAUGUcCGCGAAAAGUCa- -3'
miRNA:   3'- aGUAcUUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 112724 0.8 0.907692
Target:  5'- gUCAgaacGAACAUGUUUAUGAAAAGUCa- -3'
miRNA:   3'- -AGUa---CUUGUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 132107 0.79 0.932359
Target:  5'- uUCGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132227 0.79 0.932359
Target:  5'- uUCGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 132355 0.79 0.932359
Target:  5'- uUCGUGAACAUGUUCAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5'
11682 3' -43.5 NC_003102.1 + 56047 0.77 0.968012
Target:  5'- cUCA--AACAUGUUUACGAAAAGUCa- -3'
miRNA:   3'- -AGUacUUGUACAAGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 137873 0.76 0.984041
Target:  5'- uUCAUGAACAUGUUCAUaAAcauGUCUAu -3'
miRNA:   3'- -AGUACUUGUACAAGUGcUUuu-CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 103495 0.75 0.989288
Target:  5'- uUCGUGcucaAACGUGUcCGCGAAAAGUCa- -3'
miRNA:   3'- -AGUAC----UUGUACAaGUGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 54985 0.75 0.990699
Target:  5'- uUCAUGAACAUGUUUAUGAAcuuGUUa- -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.