miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 3' -43.5 NC_003102.1 + 137433 0.66 1
Target:  5'- uUCGUGGACAUGUuaaauuuuuuacaagUCuacggcuAUGAAAAGUCg- -3'
miRNA:   3'- -AGUACUUGUACA---------------AG-------UGCUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 15663 0.68 0.999978
Target:  5'- uUCAaauUGAACGUGUgCACGAGcAAGUUgAa -3'
miRNA:   3'- -AGU---ACUUGUACAaGUGCUU-UUCAGgU- -5'
11682 3' -43.5 NC_003102.1 + 32744 0.68 0.999978
Target:  5'- --cUGaAGCAUGUUUAUGAAAAGggCCGc -3'
miRNA:   3'- aguAC-UUGUACAAGUGCUUUUCa-GGU- -5'
11682 3' -43.5 NC_003102.1 + 132512 1.12 0.032034
Target:  5'- uUCAUGAACAUGUUCACGAAAAGUCCAa -3'
miRNA:   3'- -AGUACUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 37567 0.66 1
Target:  5'- --cUGAuCAUGUUUcuGCGcuAAGUCCAa -3'
miRNA:   3'- aguACUuGUACAAG--UGCuuUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 137229 0.66 1
Target:  5'- --uUGuACAUaUUUAUGAAAAGUCCGa -3'
miRNA:   3'- aguACuUGUAcAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132923 0.67 0.999999
Target:  5'- uUCAUaAACAUGUUCAUaAAuAGUCUg -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUuUCAGGu -5'
11682 3' -43.5 NC_003102.1 + 137177 0.67 0.999999
Target:  5'- uUCGUGuACAUGUUaaauuagucCACGuAAAuuGGUCCAc -3'
miRNA:   3'- -AGUACuUGUACAA---------GUGC-UUU--UCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 103774 0.67 0.999997
Target:  5'- uUCGUGAACAUGUcgAUGGucaaAAAGUCg- -3'
miRNA:   3'- -AGUACUUGUACAagUGCU----UUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 132468 0.68 0.999982
Target:  5'- uUCAUGAACAUGUUCAaacuuuuagauuuuUGAGAcaaaauuuAG-CCAg -3'
miRNA:   3'- -AGUACUUGUACAAGU--------------GCUUU--------UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 55919 0.68 0.999994
Target:  5'- ----cAAUAUGUUCGUGAAAAGUCUAa -3'
miRNA:   3'- aguacUUGUACAAGUGCUUUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132233 0.67 0.999998
Target:  5'- uUUAUGAACAUGUUUuuaAAAAGUCg- -3'
miRNA:   3'- -AGUACUUGUACAAGugcUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 103256 0.66 1
Target:  5'- aUCGUGGACAUGacCGCGGAcgcgacCCAa -3'
miRNA:   3'- -AGUACUUGUACaaGUGCUUuuca--GGU- -5'
11682 3' -43.5 NC_003102.1 + 120761 0.68 0.999992
Target:  5'- ---cGAACGUGcUUCcCGAcGAAGUCCGa -3'
miRNA:   3'- aguaCUUGUAC-AAGuGCU-UUUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 127335 0.66 1
Target:  5'- -aAUGGACGUGgcCGCGAAGGcGUUUAa -3'
miRNA:   3'- agUACUUGUACaaGUGCUUUU-CAGGU- -5'
11682 3' -43.5 NC_003102.1 + 120689 0.67 0.999999
Target:  5'- ---aGGACAUGUUCgACGAAcauuggaguaugaacAAGUUCAu -3'
miRNA:   3'- aguaCUUGUACAAG-UGCUU---------------UUCAGGU- -5'
11682 3' -43.5 NC_003102.1 + 132349 0.68 0.999982
Target:  5'- uUCAUGAACAUGUUCAaacuuuuagauuuuUGAGAcaaaauuuAG-CCAg -3'
miRNA:   3'- -AGUACUUGUACAAGU--------------GCUUU--------UCaGGU- -5'
11682 3' -43.5 NC_003102.1 + 10920 0.68 0.999978
Target:  5'- cUUAUuAACAUGUUCACaAAAAGUCa- -3'
miRNA:   3'- -AGUAcUUGUACAAGUGcUUUUCAGgu -5'
11682 3' -43.5 NC_003102.1 + 17650 0.66 1
Target:  5'- -aGUGAuuguCGUGUUCACGAucAGaUCUg -3'
miRNA:   3'- agUACUu---GUACAAGUGCUuuUC-AGGu -5'
11682 3' -43.5 NC_003102.1 + 112749 0.66 1
Target:  5'- aCGUGGacuaauuuaACAUGUcaACGAAAAGUCg- -3'
miRNA:   3'- aGUACU---------UGUACAagUGCUUUUCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.