miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 55720 1.04 0.088395
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55764 0.9 0.442781
Target:  5'- gUUUAACAAGUUCAUGAACAUGUUUAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55796 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55902 1.03 0.091069
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 69577 0.73 0.997273
Target:  5'- gUCCAACAcGgUUAUGAACGUGUUUc- -3'
miRNA:   3'- -AGGUUGUuCaAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 69744 0.7 0.999687
Target:  5'- uUCCGaaACAcGUUCAuaaccguguUGGACAUGUUCGu -3'
miRNA:   3'- -AGGU--UGUuCAAGU---------ACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 96037 0.71 0.99949
Target:  5'- gUUCGGCGGcGgcacCGUGAACAUGUUCAAc -3'
miRNA:   3'- -AGGUUGUU-Caa--GUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 103783 0.73 0.996101
Target:  5'- gUCCGACuu-UUCGUGAACAUG-UCGAu -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACaAGUU- -5'
11682 5' -43.1 NC_003102.1 + 103961 0.66 1
Target:  5'- aCUAGCAAcgUCAagugucGAACAUGUUCGAu -3'
miRNA:   3'- aGGUUGUUcaAGUa-----CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 105254 0.68 0.999992
Target:  5'- cUCCAAagucguaauAGaUUCAUcGAACAUGUUCGAu -3'
miRNA:   3'- -AGGUUgu-------UC-AAGUA-CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 118283 0.7 0.999687
Target:  5'- gUCC-ACAugcuGUUCGUGAACAcgcauccgaUGUUCGAu -3'
miRNA:   3'- -AGGuUGUu---CAAGUACUUGU---------ACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 120527 0.68 0.999989
Target:  5'- cUCCAAU--GUUCGUcGAACAUGUccUCAu -3'
miRNA:   3'- -AGGUUGuuCAAGUA-CUUGUACA--AGUu -5'
11682 5' -43.1 NC_003102.1 + 121743 0.7 0.999814
Target:  5'- gUCGGcCAGGUUCGuuUGAACGUGUUUGAc -3'
miRNA:   3'- aGGUU-GUUCAAGU--ACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 126942 0.66 1
Target:  5'- uUCCGAgGAc--UAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUgUUcaaGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132101 0.69 0.999968
Target:  5'- --aGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- aggUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132214 0.68 0.999989
Target:  5'- gUUgGACuuacuuUUCGUGAACAUGUUCAu -3'
miRNA:   3'- -AGgUUGuuc---AAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132219 0.68 0.999989
Target:  5'- aCUuACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- aGGuUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132243 0.88 0.550354
Target:  5'- gUCUAACAAGUUUAUGAACAUGUUUu- -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 132275 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132305 0.73 0.996101
Target:  5'- gCCAGC-AGUUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGuUCAAGUAcUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.