miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 54956 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54981 0.87 0.595744
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUUAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55013 0.92 0.36584
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55045 0.92 0.36584
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55075 0.82 0.815841
Target:  5'- gCCAGCAA-UUUAUGAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55121 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55153 0.87 0.584321
Target:  5'- gUCUAACAAGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55249 0.99 0.168097
Target:  5'- aUCUAACAAGUUCAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55275 0.67 0.999995
Target:  5'- aUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 55281 1.01 0.11882
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55327 0.66 1
Target:  5'- gUUgGACuu-UUCGUGAACAUGUUUAu -3'
miRNA:   3'- -AGgUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55376 0.98 0.172942
Target:  5'- aUCCAACAAGUUCAUGAACAUGUUUu- -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 55408 1.07 0.059791
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55438 0.69 0.99992
Target:  5'- -aUAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- agGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55472 0.87 0.584321
Target:  5'- gUCCAACAAGUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55502 0.68 0.999992
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55563 1.03 0.091069
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55595 0.67 0.999997
Target:  5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55627 0.67 0.999997
Target:  5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55656 0.74 0.992518
Target:  5'- -gCAGCGA-UUUAUGAACAUGUUCAc -3'
miRNA:   3'- agGUUGUUcAAGUACUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.