miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 137572 0.73 0.996101
Target:  5'- aUgAACAuGUUUAUGAACAUGUUCu- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 69577 0.73 0.997273
Target:  5'- gUCCAACAcGgUUAUGAACGUGUUUc- -3'
miRNA:   3'- -AGGUUGUuCaAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 54849 0.72 0.998137
Target:  5'- gUgAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 137702 0.72 0.998474
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 121743 0.7 0.999814
Target:  5'- gUCGGcCAGGUUCGuuUGAACGUGUUUGAc -3'
miRNA:   3'- aGGUU-GUUCAAGU--ACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132346 0.71 0.999599
Target:  5'- gUUgGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- -AGgUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133206 0.71 0.999356
Target:  5'- -aUAACuu-UUCAUGAACAUGUUCAu -3'
miRNA:   3'- agGUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54819 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54787 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 137289 0.67 0.999996
Target:  5'- gUCUGACuu-UUCGUGGACAUGUcucUCGAa -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACA---AGUU- -5'
11682 5' -43.1 NC_003102.1 + 55627 0.67 0.999997
Target:  5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55595 0.67 0.999997
Target:  5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137733 0.67 0.999997
Target:  5'- --gAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 36248 0.67 0.999997
Target:  5'- gUCaGACAGGUUCGaauUGAACGUGgcCGAc -3'
miRNA:   3'- -AGgUUGUUCAAGU---ACUUGUACaaGUU- -5'
11682 5' -43.1 NC_003102.1 + 54869 0.66 0.999999
Target:  5'- gUCUAACAuGUUCAUaacCAUGUUCGc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcuuGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 126942 0.66 1
Target:  5'- uUCCGAgGAc--UAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUgUUcaaGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 139070 0.66 1
Target:  5'- aUCaAACAuGaUUAUGAACAUGUUCGc -3'
miRNA:   3'- -AGgUUGUuCaAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 18394 0.66 1
Target:  5'- gUCCggUuAGUUCAUcGAGCAUGaUCu- -3'
miRNA:   3'- -AGGuuGuUCAAGUA-CUUGUACaAGuu -5'
11682 5' -43.1 NC_003102.1 + 103961 0.66 1
Target:  5'- aCUAGCAAcgUCAagugucGAACAUGUUCGAu -3'
miRNA:   3'- aGGUUGUUcaAGUa-----CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132478 1.09 0.045474
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.