miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 42459 0.87 0.584321
Target:  5'- gUCCAACuu-UUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55153 0.87 0.584321
Target:  5'- gUCUAACAAGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55472 0.87 0.584321
Target:  5'- gUCCAACAAGUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132819 0.87 0.584321
Target:  5'- -aUAACAGGUUCAUGAACAUGUUUAc -3'
miRNA:   3'- agGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54949 0.87 0.595744
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUUAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54981 0.87 0.595744
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUUAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132625 0.87 0.595744
Target:  5'- gUCUAACAAGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132933 0.86 0.618678
Target:  5'- gUCUAACAGGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132853 0.86 0.63017
Target:  5'- gUCUAACAGGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 138055 0.85 0.695362
Target:  5'- aUCCAGCAAauguucauagacauGUUUAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUU--------------CAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132789 0.83 0.785739
Target:  5'- gUCCAACAuGUUaAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAgUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55075 0.82 0.815841
Target:  5'- gCCAGCAA-UUUAUGAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137860 0.81 0.852984
Target:  5'- gCCuauaAACAuGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- aGG----UUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133378 0.78 0.943749
Target:  5'- gUCAGCGA-UUUAUGAACAUGUUCAGa -3'
miRNA:   3'- aGGUUGUUcAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132965 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55121 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132997 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137210 0.77 0.957607
Target:  5'- gUCCGACAGGUUCAaaucGAACGUGgcCAAc -3'
miRNA:   3'- -AGGUUGUUCAAGUa---CUUGUACaaGUU- -5'
11682 5' -43.1 NC_003102.1 + 132749 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54909 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.