miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 105254 0.68 0.999992
Target:  5'- cUCCAAagucguaauAGaUUCAUcGAACAUGUUCGAu -3'
miRNA:   3'- -AGGUUgu-------UC-AAGUA-CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132883 0.68 0.999992
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55502 0.68 0.999992
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132214 0.68 0.999989
Target:  5'- gUUgGACuuacuuUUCGUGAACAUGUUCAu -3'
miRNA:   3'- -AGgUUGuuc---AAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 120527 0.68 0.999989
Target:  5'- cUCCAAU--GUUCGUcGAACAUGUccUCAu -3'
miRNA:   3'- -AGGUUGuuCAAGUA-CUUGUACA--AGUu -5'
11682 5' -43.1 NC_003102.1 + 132219 0.68 0.999989
Target:  5'- aCUuACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- aGGuUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132655 0.68 0.999989
Target:  5'- gCCAGCAA-UUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137910 0.68 0.999984
Target:  5'- --aAACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 26782 0.68 0.999984
Target:  5'- --aAACAuGUUUGUGAACAUGUUUGAu -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137652 0.68 0.999977
Target:  5'- cUCgAACAuGUUUAUGAACAUGUc--- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAaguu -5'
11682 5' -43.1 NC_003102.1 + 132101 0.69 0.999968
Target:  5'- --aGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- aggUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 12459 0.69 0.999968
Target:  5'- aCCGAUGAGcaccgUCAUcAACAUGUUCGGa -3'
miRNA:   3'- aGGUUGUUCa----AGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 133590 0.69 0.999968
Target:  5'- gUCCGACAcaaAGUUgacggCAUuGACGUGUUCGAa -3'
miRNA:   3'- -AGGUUGU---UCAA-----GUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137814 0.69 0.999941
Target:  5'- --aGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 36094 0.69 0.99992
Target:  5'- aUCGAguGGUUCAUGAugAUGaUCAc -3'
miRNA:   3'- aGGUUguUCAAGUACUugUACaAGUu -5'
11682 5' -43.1 NC_003102.1 + 55438 0.69 0.99992
Target:  5'- -aUAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- agGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 26909 0.7 0.999893
Target:  5'- gUgAACAuGUUUGUGAACAUGUUUAu -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 121743 0.7 0.999814
Target:  5'- gUCGGcCAGGUUCGuuUGAACGUGUUUGAc -3'
miRNA:   3'- aGGUU-GUUCAAGU--ACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 26792 0.7 0.999687
Target:  5'- --gAACAuGUUCGUGGACAUGUUgAGc -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAgUU- -5'
11682 5' -43.1 NC_003102.1 + 69744 0.7 0.999687
Target:  5'- uUCCGaaACAcGUUCAuaaccguguUGGACAUGUUCGu -3'
miRNA:   3'- -AGGU--UGUuCAAGU---------ACUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.