miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 69744 0.7 0.999687
Target:  5'- uUCCGaaACAcGUUCAuaaccguguUGGACAUGUUCGu -3'
miRNA:   3'- -AGGU--UGUuCAAGU---------ACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132346 0.71 0.999599
Target:  5'- gUUgGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- -AGgUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137869 0.71 0.99949
Target:  5'- uUCauaGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- -AGg--UUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 96037 0.71 0.99949
Target:  5'- gUUCGGCGGcGgcacCGUGAACAUGUUCAAc -3'
miRNA:   3'- -AGGUUGUU-Caa--GUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 133206 0.71 0.999356
Target:  5'- -aUAACuu-UUCAUGAACAUGUUCAu -3'
miRNA:   3'- agGUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54819 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54787 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 26957 0.72 0.998995
Target:  5'- gUCCAAC-GGUUCAaucaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGuUCAAGUac--UUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 10465 0.72 0.998758
Target:  5'- -aCGAC-GGUUCAUGAACAUGUa--- -3'
miRNA:   3'- agGUUGuUCAAGUACUUGUACAaguu -5'
11682 5' -43.1 NC_003102.1 + 137702 0.72 0.998474
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54849 0.72 0.998137
Target:  5'- gUgAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 69577 0.73 0.997273
Target:  5'- gUCCAACAcGgUUAUGAACGUGUUUc- -3'
miRNA:   3'- -AGGUUGUuCaAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 132305 0.73 0.996101
Target:  5'- gCCAGC-AGUUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGuUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 103783 0.73 0.996101
Target:  5'- gUCCGACuu-UUCGUGAACAUG-UCGAu -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACaAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132424 0.73 0.996101
Target:  5'- gCCAGC-AGUUUAUaAACAUGUUCAu -3'
miRNA:   3'- aGGUUGuUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137572 0.73 0.996101
Target:  5'- aUgAACAuGUUUAUGAACAUGUUCu- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 54662 0.74 0.994543
Target:  5'- gUCCAACuuuua-GUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGuucaagUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55656 0.74 0.992518
Target:  5'- -gCAGCGA-UUUAUGAACAUGUUCAc -3'
miRNA:   3'- agGUUGUUcAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132709 0.75 0.988405
Target:  5'- gUCUAACAuGUUCAUaaAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUuCAAGUAc-UUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137747 0.77 0.968926
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUUAu -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.