miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 132478 1.09 0.045474
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55408 1.07 0.059791
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55720 1.04 0.088395
Target:  5'- gUCCAACAAGUUCAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55563 1.03 0.091069
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55902 1.03 0.091069
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55281 1.01 0.11882
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133122 1.01 0.11882
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132275 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132394 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132522 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55796 1.01 0.122351
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132358 1.01 0.125979
Target:  5'- gUCAACAAGUUCAUGAACAUGUUCAAa -3'
miRNA:   3'- aGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55249 0.99 0.168097
Target:  5'- aUCUAACAAGUUCAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 55376 0.98 0.172942
Target:  5'- aUCCAACAAGUUCAUGAACAUGUUUu- -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 133090 0.98 0.172942
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 54836 0.97 0.204699
Target:  5'- -aCAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- agGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55045 0.92 0.36584
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55013 0.92 0.36584
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55764 0.9 0.442781
Target:  5'- gUUUAACAAGUUCAUGAACAUGUUUAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132243 0.88 0.550354
Target:  5'- gUCUAACAAGUUUAUGAACAUGUUUu- -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.