miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 55275 0.67 0.999995
Target:  5'- aUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 121743 0.7 0.999814
Target:  5'- gUCGGcCAGGUUCGuuUGAACGUGUUUGAc -3'
miRNA:   3'- aGGUU-GUUCAAGU--ACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 26909 0.7 0.999893
Target:  5'- gUgAACAuGUUUGUGAACAUGUUUAu -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132101 0.69 0.999968
Target:  5'- --aGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- aggUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137652 0.68 0.999977
Target:  5'- cUCgAACAuGUUUAUGAACAUGUc--- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAaguu -5'
11682 5' -43.1 NC_003102.1 + 26782 0.68 0.999984
Target:  5'- --aAACAuGUUUGUGAACAUGUUUGAu -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 120527 0.68 0.999989
Target:  5'- cUCCAAU--GUUCGUcGAACAUGUccUCAu -3'
miRNA:   3'- -AGGUUGuuCAAGUA-CUUGUACA--AGUu -5'
11682 5' -43.1 NC_003102.1 + 132219 0.68 0.999989
Target:  5'- aCUuACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- aGGuUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 105254 0.68 0.999992
Target:  5'- cUCCAAagucguaauAGaUUCAUcGAACAUGUUCGAu -3'
miRNA:   3'- -AGGUUgu-------UC-AAGUA-CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 132346 0.71 0.999599
Target:  5'- gUUgGACuu-UUCGUGAACAUGUUCAu -3'
miRNA:   3'- -AGgUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133206 0.71 0.999356
Target:  5'- -aUAACuu-UUCAUGAACAUGUUCAu -3'
miRNA:   3'- agGUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54819 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 137860 0.81 0.852984
Target:  5'- gCCuauaAACAuGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- aGG----UUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137747 0.77 0.968926
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUUAu -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54662 0.74 0.994543
Target:  5'- gUCCAACuuuua-GUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGuucaagUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137572 0.73 0.996101
Target:  5'- aUgAACAuGUUUAUGAACAUGUUCu- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 69577 0.73 0.997273
Target:  5'- gUCCAACAcGgUUAUGAACGUGUUUc- -3'
miRNA:   3'- -AGGUUGUuCaAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 54849 0.72 0.998137
Target:  5'- gUgAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 137702 0.72 0.998474
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54787 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.