Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11682 | 5' | -43.1 | NC_003102.1 | + | 137442 | 0.66 | 1 |
Target: 5'- gUCUGACuu-UUCGUGGACAUGUUa-- -3' miRNA: 3'- -AGGUUGuucAAGUACUUGUACAAguu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 133590 | 0.69 | 0.999968 |
Target: 5'- gUCCGACAcaaAGUUgacggCAUuGACGUGUUCGAa -3' miRNA: 3'- -AGGUUGU---UCAA-----GUAcUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 36094 | 0.69 | 0.99992 |
Target: 5'- aUCGAguGGUUCAUGAugAUGaUCAc -3' miRNA: 3'- aGGUUguUCAAGUACUugUACaAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132478 | 1.09 | 0.045474 |
Target: 5'- gUCCAACAAGUUCAUGAACAUGUUCAAa -3' miRNA: 3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 126942 | 0.66 | 1 |
Target: 5'- uUCCGAgGAc--UAUGAACAUGUUUAAa -3' miRNA: 3'- -AGGUUgUUcaaGUACUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 54869 | 0.66 | 0.999999 |
Target: 5'- gUCUAACAuGUUCAUaacCAUGUUCGc -3' miRNA: 3'- -AGGUUGUuCAAGUAcuuGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137733 | 0.67 | 0.999997 |
Target: 5'- --gAACAuGUUCAUaAACAUGUUCAu -3' miRNA: 3'- aggUUGUuCAAGUAcUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 55595 | 0.67 | 0.999997 |
Target: 5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3' miRNA: 3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 23355 | 0.67 | 0.999996 |
Target: 5'- --aGGCAGGUaCGUGcGACGUGUUCAc -3' miRNA: 3'- aggUUGUUCAaGUAC-UUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 12459 | 0.69 | 0.999968 |
Target: 5'- aCCGAUGAGcaccgUCAUcAACAUGUUCGGa -3' miRNA: 3'- aGGUUGUUCa----AGUAcUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132883 | 0.68 | 0.999992 |
Target: 5'- gCCAGCAA-UUUAUaAACAUGUUCAc -3' miRNA: 3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137289 | 0.67 | 0.999996 |
Target: 5'- gUCUGACuu-UUCGUGGACAUGUcucUCGAa -3' miRNA: 3'- -AGGUUGuucAAGUACUUGUACA---AGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 103961 | 0.66 | 1 |
Target: 5'- aCUAGCAAcgUCAagugucGAACAUGUUCGAu -3' miRNA: 3'- aGGUUGUUcaAGUa-----CUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 132655 | 0.68 | 0.999989 |
Target: 5'- gCCAGCAA-UUUAUaAACAUGUUCAu -3' miRNA: 3'- aGGUUGUUcAAGUAcUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 18394 | 0.66 | 1 |
Target: 5'- gUCCggUuAGUUCAUcGAGCAUGaUCu- -3' miRNA: 3'- -AGGuuGuUCAAGUA-CUUGUACaAGuu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 55627 | 0.67 | 0.999997 |
Target: 5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3' miRNA: 3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137910 | 0.68 | 0.999984 |
Target: 5'- --aAACAuGUUCAUaAACAUGUUCGAg -3' miRNA: 3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 137814 | 0.69 | 0.999941 |
Target: 5'- --aGACAuGUUCAUaAACAUGUUCGAg -3' miRNA: 3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 139070 | 0.66 | 1 |
Target: 5'- aUCaAACAuGaUUAUGAACAUGUUCGc -3' miRNA: 3'- -AGgUUGUuCaAGUACUUGUACAAGUu -5' |
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11682 | 5' | -43.1 | NC_003102.1 | + | 36248 | 0.67 | 0.999997 |
Target: 5'- gUCaGACAGGUUCGaauUGAACGUGgcCGAc -3' miRNA: 3'- -AGgUUGUUCAAGU---ACUUGUACaaGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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