miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 18394 0.66 1
Target:  5'- gUCCggUuAGUUCAUcGAGCAUGaUCu- -3'
miRNA:   3'- -AGGuuGuUCAAGUA-CUUGUACaAGuu -5'
11682 5' -43.1 NC_003102.1 + 126942 0.66 1
Target:  5'- uUCCGAgGAc--UAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUgUUcaaGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 139070 0.66 1
Target:  5'- aUCaAACAuGaUUAUGAACAUGUUCGc -3'
miRNA:   3'- -AGgUUGUuCaAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 103961 0.66 1
Target:  5'- aCUAGCAAcgUCAagugucGAACAUGUUCGAu -3'
miRNA:   3'- aGGUUGUUcaAGUa-----CUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137442 0.66 1
Target:  5'- gUCUGACuu-UUCGUGGACAUGUUa-- -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 55327 0.66 1
Target:  5'- gUUgGACuu-UUCGUGAACAUGUUUAu -3'
miRNA:   3'- -AGgUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 132313 0.66 1
Target:  5'- uUUgAACAuGUUCAUGAACuUGUUgGAc -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGuACAAgUU- -5'
11682 5' -43.1 NC_003102.1 + 54869 0.66 0.999999
Target:  5'- gUCUAACAuGUUCAUaacCAUGUUCGc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcuuGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137733 0.67 0.999997
Target:  5'- --gAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55595 0.67 0.999997
Target:  5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 55627 0.67 0.999997
Target:  5'- gUCUAACAGaUUUAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUUcAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 36248 0.67 0.999997
Target:  5'- gUCaGACAGGUUCGaauUGAACGUGgcCGAc -3'
miRNA:   3'- -AGgUUGUUCAAGU---ACUUGUACaaGUU- -5'
11682 5' -43.1 NC_003102.1 + 137289 0.67 0.999996
Target:  5'- gUCUGACuu-UUCGUGGACAUGUcucUCGAa -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACA---AGUU- -5'
11682 5' -43.1 NC_003102.1 + 23355 0.67 0.999996
Target:  5'- --aGGCAGGUaCGUGcGACGUGUUCAc -3'
miRNA:   3'- aggUUGUUCAaGUAC-UUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54745 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 132832 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 132800 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 132585 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54956 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 55275 0.67 0.999995
Target:  5'- aUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.