miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 10465 0.72 0.998758
Target:  5'- -aCGAC-GGUUCAUGAACAUGUa--- -3'
miRNA:   3'- agGUUGuUCAAGUACUUGUACAaguu -5'
11682 5' -43.1 NC_003102.1 + 12459 0.69 0.999968
Target:  5'- aCCGAUGAGcaccgUCAUcAACAUGUUCGGa -3'
miRNA:   3'- aGGUUGUUCa----AGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 18394 0.66 1
Target:  5'- gUCCggUuAGUUCAUcGAGCAUGaUCu- -3'
miRNA:   3'- -AGGuuGuUCAAGUA-CUUGUACaAGuu -5'
11682 5' -43.1 NC_003102.1 + 23355 0.67 0.999996
Target:  5'- --aGGCAGGUaCGUGcGACGUGUUCAc -3'
miRNA:   3'- aggUUGUUCAaGUAC-UUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 26782 0.68 0.999984
Target:  5'- --aAACAuGUUUGUGAACAUGUUUGAu -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 26792 0.7 0.999687
Target:  5'- --gAACAuGUUCGUGGACAUGUUgAGc -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAgUU- -5'
11682 5' -43.1 NC_003102.1 + 26909 0.7 0.999893
Target:  5'- gUgAACAuGUUUGUGAACAUGUUUAu -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 26957 0.72 0.998995
Target:  5'- gUCCAAC-GGUUCAaucaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGuUCAAGUac--UUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 36094 0.69 0.99992
Target:  5'- aUCGAguGGUUCAUGAugAUGaUCAc -3'
miRNA:   3'- aGGUUguUCAAGUACUugUACaAGUu -5'
11682 5' -43.1 NC_003102.1 + 36248 0.67 0.999997
Target:  5'- gUCaGACAGGUUCGaauUGAACGUGgcCGAc -3'
miRNA:   3'- -AGgUUGUUCAAGU---ACUUGUACaaGUU- -5'
11682 5' -43.1 NC_003102.1 + 42459 0.87 0.584321
Target:  5'- gUCCAACuu-UUCAUGAACAUGUUCAAa -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 54662 0.74 0.994543
Target:  5'- gUCCAACuuuua-GUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGuucaagUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54745 0.67 0.999996
Target:  5'- gUgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54787 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54819 0.71 0.999193
Target:  5'- --aAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aggUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54836 0.97 0.204699
Target:  5'- -aCAACAAGUUCAUGAACAUGUUCAc -3'
miRNA:   3'- agGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54849 0.72 0.998137
Target:  5'- gUgAACAuGUUCAUGAACAUGUUa-- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 54869 0.66 0.999999
Target:  5'- gUCUAACAuGUUCAUaacCAUGUUCGc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcuuGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54909 0.77 0.957607
Target:  5'- gUCUAACAuGUUCAUaAACAUGUUCAc -3'
miRNA:   3'- -AGGUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 54949 0.87 0.595744
Target:  5'- gUCUAACAuGUUCAUGAACAUGUUUAc -3'
miRNA:   3'- -AGGUUGUuCAAGUACUUGUACAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.