miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11682 5' -43.1 NC_003102.1 + 139070 0.66 1
Target:  5'- aUCaAACAuGaUUAUGAACAUGUUCGc -3'
miRNA:   3'- -AGgUUGUuCaAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 138055 0.85 0.695362
Target:  5'- aUCCAGCAAauguucauagacauGUUUAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUU--------------CAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137910 0.68 0.999984
Target:  5'- --aAACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137869 0.71 0.99949
Target:  5'- uUCauaGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- -AGg--UUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137860 0.81 0.852984
Target:  5'- gCCuauaAACAuGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- aGG----UUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137814 0.69 0.999941
Target:  5'- --aGACAuGUUCAUaAACAUGUUCGAg -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 137747 0.77 0.968926
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUUAu -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137733 0.67 0.999997
Target:  5'- --gAACAuGUUCAUaAACAUGUUCAu -3'
miRNA:   3'- aggUUGUuCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 137702 0.72 0.998474
Target:  5'- cUCgAACAuGUUUAUGAACAUGUUa-- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 137652 0.68 0.999977
Target:  5'- cUCgAACAuGUUUAUGAACAUGUc--- -3'
miRNA:   3'- -AGgUUGUuCAAGUACUUGUACAaguu -5'
11682 5' -43.1 NC_003102.1 + 137572 0.73 0.996101
Target:  5'- aUgAACAuGUUUAUGAACAUGUUCu- -3'
miRNA:   3'- aGgUUGUuCAAGUACUUGUACAAGuu -5'
11682 5' -43.1 NC_003102.1 + 137442 0.66 1
Target:  5'- gUCUGACuu-UUCGUGGACAUGUUa-- -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACAAguu -5'
11682 5' -43.1 NC_003102.1 + 137289 0.67 0.999996
Target:  5'- gUCUGACuu-UUCGUGGACAUGUcucUCGAa -3'
miRNA:   3'- -AGGUUGuucAAGUACUUGUACA---AGUU- -5'
11682 5' -43.1 NC_003102.1 + 137210 0.77 0.957607
Target:  5'- gUCCGACAGGUUCAaaucGAACGUGgcCAAc -3'
miRNA:   3'- -AGGUUGUUCAAGUa---CUUGUACaaGUU- -5'
11682 5' -43.1 NC_003102.1 + 133590 0.69 0.999968
Target:  5'- gUCCGACAcaaAGUUgacggCAUuGACGUGUUCGAa -3'
miRNA:   3'- -AGGUUGU---UCAA-----GUAcUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 133378 0.78 0.943749
Target:  5'- gUCAGCGA-UUUAUGAACAUGUUCAGa -3'
miRNA:   3'- aGGUUGUUcAAGUACUUGUACAAGUU- -5'
11682 5' -43.1 NC_003102.1 + 133206 0.71 0.999356
Target:  5'- -aUAACuu-UUCAUGAACAUGUUCAu -3'
miRNA:   3'- agGUUGuucAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133186 0.77 0.968926
Target:  5'- gUCUAACAAGUUUAUaAACAUGUUUAu -3'
miRNA:   3'- -AGGUUGUUCAAGUAcUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133122 1.01 0.11882
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUCAu -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUu -5'
11682 5' -43.1 NC_003102.1 + 133090 0.98 0.172942
Target:  5'- gUCUAACAAGUUCAUGAACAUGUUUAAa -3'
miRNA:   3'- -AGGUUGUUCAAGUACUUGUACAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.