miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11683 5' -52.9 NC_003102.1 + 93413 0.67 0.956065
Target:  5'- uUCGUCGAcgGUcGAGGCGAgaGCGCcGCGc -3'
miRNA:   3'- gAGCAGCU--CGuCUCUGCU--UGUGuCGU- -5'
11683 5' -52.9 NC_003102.1 + 102040 0.67 0.952022
Target:  5'- aUCGaagCGgcGGCGGuGGCGGugGCGGCGg -3'
miRNA:   3'- gAGCa--GC--UCGUCuCUGCUugUGUCGU- -5'
11683 5' -52.9 NC_003102.1 + 126286 0.67 0.947736
Target:  5'- -cCGUuucCGAGCAGcgGGACGGucaGCAGCGg -3'
miRNA:   3'- gaGCA---GCUCGUC--UCUGCUug-UGUCGU- -5'
11683 5' -52.9 NC_003102.1 + 123377 0.68 0.933394
Target:  5'- -gCGUCGAGUGGcGACGAgGCGgAGUAg -3'
miRNA:   3'- gaGCAGCUCGUCuCUGCU-UGUgUCGU- -5'
11683 5' -52.9 NC_003102.1 + 59518 0.68 0.922578
Target:  5'- gUCuUCGAGCGGcGACGcGACgGCGGCAa -3'
miRNA:   3'- gAGcAGCUCGUCuCUGC-UUG-UGUCGU- -5'
11683 5' -52.9 NC_003102.1 + 33097 0.69 0.884138
Target:  5'- -cUGUCGgcGGCGGcGGCGAcuGCACGGCGu -3'
miRNA:   3'- gaGCAGC--UCGUCuCUGCU--UGUGUCGU- -5'
11683 5' -52.9 NC_003102.1 + 133769 0.7 0.837284
Target:  5'- --aGUCGAGCgucugAGAGACGA--GCGGCGu -3'
miRNA:   3'- gagCAGCUCG-----UCUCUGCUugUGUCGU- -5'
11683 5' -52.9 NC_003102.1 + 112998 0.7 0.853765
Target:  5'- gUCGUCGuGGCGGugguggugucGGCGGugGCGGCAg -3'
miRNA:   3'- gAGCAGC-UCGUCu---------CUGCUugUGUCGU- -5'
11683 5' -52.9 NC_003102.1 + 134898 1.09 0.005173
Target:  5'- cCUCGUCGAGCAGAGACGAACACAGCAu -3'
miRNA:   3'- -GAGCAGCUCGUCUCUGCUUGUGUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.