miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11684 3' -46.6 NC_003102.1 + 3443 1.09 0.02212
Target:  5'- uCAAGUCGUGUCUUCCAUUUCGUUGCGu -3'
miRNA:   3'- -GUUCAGCACAGAAGGUAAAGCAACGC- -5'
11684 3' -46.6 NC_003102.1 + 3642 0.7 0.996029
Target:  5'- -cGGUCGUGUCUUCCAcUUCcUU-CGa -3'
miRNA:   3'- guUCAGCACAGAAGGUaAAGcAAcGC- -5'
11684 3' -46.6 NC_003102.1 + 3796 0.66 0.999861
Target:  5'- cUAAGUcuacugcCGUGUCUUCCAUUUCuaaGUcuacUGCc -3'
miRNA:   3'- -GUUCA-------GCACAGAAGGUAAAG---CA----ACGc -5'
11684 3' -46.6 NC_003102.1 + 3843 0.73 0.973845
Target:  5'- --cGUCGUGUCUUUCAUUUCugagGCu -3'
miRNA:   3'- guuCAGCACAGAAGGUAAAGcaa-CGc -5'
11684 3' -46.6 NC_003102.1 + 8455 0.7 0.99533
Target:  5'- gAGGUCGcGUCUUCCGUUUCuucuaaacGCGc -3'
miRNA:   3'- gUUCAGCaCAGAAGGUAAAGcaa-----CGC- -5'
11684 3' -46.6 NC_003102.1 + 13104 0.69 0.998027
Target:  5'- --cGUCGUGUCcacUUCCuUUUCGagcgUGCGc -3'
miRNA:   3'- guuCAGCACAG---AAGGuAAAGCa---ACGC- -5'
11684 3' -46.6 NC_003102.1 + 32134 0.71 0.992612
Target:  5'- --cGUCGcaGUCUUCCAgaUCGUUGUu -3'
miRNA:   3'- guuCAGCa-CAGAAGGUaaAGCAACGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.