miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 3' -42.1 NC_003102.1 + 55425 0.77 0.979731
Target:  5'- aAACAUGUUCAUAAAAAGUCcaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55489 0.68 0.999996
Target:  5'- aAACAUGUUCAcGAAAAGUCcaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55580 0.69 0.999989
Target:  5'- aAACAUGUUCAcAAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55749 0.69 0.999984
Target:  5'- gAACAUGUUUAUGAAAAGUCcaacuuCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGucc---GUUC- -5'
11692 3' -42.1 NC_003102.1 + 55813 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55919 0.74 0.998098
Target:  5'- cAAUAUGUUCGUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 56050 0.7 0.999942
Target:  5'- aAACAUGUUUAcGAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 56170 0.67 0.999999
Target:  5'- uACAUGUUUAUGAuuuauuuugaAAAGUCGGcCAGGu -3'
miRNA:   3'- uUGUACAAGUAUU----------UUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 61545 0.67 1
Target:  5'- uAUAUGUUUAcAAAAAGUCGGcCAGGu -3'
miRNA:   3'- uUGUACAAGUaUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 67245 0.66 1
Target:  5'- aAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 67343 0.66 1
Target:  5'- uAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 67433 0.66 1
Target:  5'- aAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 79510 0.66 1
Target:  5'- cGACAUGUUCGUGAGAucuauaugcgaguGugagucgcuuaaacuGUUAGGCAAu -3'
miRNA:   3'- -UUGUACAAGUAUUUU-------------U---------------CAGUCCGUUc -5'
11692 3' -42.1 NC_003102.1 + 89427 0.7 0.999942
Target:  5'- aAACAUGUcUAUGAAAAGUCAGaCAu- -3'
miRNA:   3'- -UUGUACAaGUAUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 93402 0.66 1
Target:  5'- aGACAcgaaaGUUCGUcGAcGGUCgAGGCGAGa -3'
miRNA:   3'- -UUGUa----CAAGUAuUUuUCAG-UCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 97874 0.67 1
Target:  5'- aAACcUGUcUAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- -UUGuACAaGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 98038 0.66 1
Target:  5'- ------aUCAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- uuguacaAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 103622 0.76 0.992285
Target:  5'- cGACAUGUUCAcGAAAAGUCGGacGCGu- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUC--CGUuc -5'
11692 3' -42.1 NC_003102.1 + 104233 0.77 0.977116
Target:  5'- cAACGUGUUCAUAAAAAGUCAacaguaauGCAAa -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUc-------CGUUc -5'
11692 3' -42.1 NC_003102.1 + 111343 0.74 0.997208
Target:  5'- cGGCAUGUaCGUAAuaauGUCGGGCAAu -3'
miRNA:   3'- -UUGUACAaGUAUUuuu-CAGUCCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.