miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 3' -42.1 NC_003102.1 + 5761 0.71 0.999911
Target:  5'- gAACA-GUUCGgccuuuuauAGUCGGGCAGGa -3'
miRNA:   3'- -UUGUaCAAGUauuuu----UCAGUCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 6094 0.68 0.999999
Target:  5'- uACGUGacuggUCAUAucuaaucGAGUCAGGCAu- -3'
miRNA:   3'- uUGUACa----AGUAUuu-----UUCAGUCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 6245 0.66 1
Target:  5'- gAACAUGUUCGUGA----UCuGGCAc- -3'
miRNA:   3'- -UUGUACAAGUAUUuuucAGuCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 10849 0.8 0.936281
Target:  5'- aAACA-GUUCAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- -UUGUaCAAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 10915 0.66 1
Target:  5'- uAACAUGUUCAcAAAAAGUCAuaCAu- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUccGUuc -5'
11692 3' -42.1 NC_003102.1 + 26929 0.66 1
Target:  5'- aAACAUGUUUAcGAAAAGUCAuacGGUu-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGU---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 26974 0.77 0.984286
Target:  5'- aAACAUGUUCAUGAAAAGUCcaacGGUu-- -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGu---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 27058 0.71 0.999758
Target:  5'- aAACAUGUUCAcGAAAAGUCAuacGGUu-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGU---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 36260 0.69 0.999989
Target:  5'- ----aGUUUAUAAAAAGUCAGaCAGGu -3'
miRNA:   3'- uuguaCAAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42508 0.8 0.93058
Target:  5'- uACAUGUUCaAUGAAAAGUCAG-CAAGu -3'
miRNA:   3'- uUGUACAAG-UAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42564 0.72 0.999687
Target:  5'- --aAUGUUCAcGAAAAGUCAGaCAAGu -3'
miRNA:   3'- uugUACAAGUaUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42620 0.83 0.819743
Target:  5'- gAACAUGUUCAUGAAAAGUUGGaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42629 1.08 0.063839
Target:  5'- aAACAUGUUCAUAAAAAGUCAGGCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42830 0.74 0.998098
Target:  5'- aAACAUGUUaAUGAAAAGUCAGcCGGGu -3'
miRNA:   3'- -UUGUACAAgUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 54726 0.77 0.982117
Target:  5'- -uCAUGUUCAUGAAAAGUCAuaCAAGu -3'
miRNA:   3'- uuGUACAAGUAUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 54823 0.71 0.999921
Target:  5'- gAACAUGUUCAcuAAAAGUUGGaCAAGu -3'
miRNA:   3'- -UUGUACAAGUauUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 54894 0.69 0.999984
Target:  5'- aAACAUGUUCAcGAAAAGUCuaacGGUc-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGu---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 54914 0.67 1
Target:  5'- gAACAUGUUCAUAAAuuG-CuGGCu-- -3'
miRNA:   3'- -UUGUACAAGUAUUUuuCaGuCCGuuc -5'
11692 3' -42.1 NC_003102.1 + 55138 0.72 0.99935
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAu- -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUuc -5'
11692 3' -42.1 NC_003102.1 + 55298 0.69 0.999989
Target:  5'- aAACAUGUUCAcAAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGuccGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.