miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 3' -42.1 NC_003102.1 + 138026 0.72 0.999486
Target:  5'- gAACAUGUUCAUGAAcauGUUuauAGGCAu- -3'
miRNA:   3'- -UUGUACAAGUAUUUuu-CAG---UCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 137127 0.66 1
Target:  5'- aGACAUGUcCAcGAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAaGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 136115 0.66 1
Target:  5'- --uGUGUUCGauaaUGAGgcGUCGGGCAu- -3'
miRNA:   3'- uugUACAAGU----AUUUuuCAGUCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 133365 0.66 1
Target:  5'- gAACAUGUUCA-GAAAAGUUAuaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 133203 0.69 0.999989
Target:  5'- aAACAUGUUCAcAAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 133107 0.7 0.999942
Target:  5'- gAACAUGUUCAUuAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAuUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132950 0.71 0.999921
Target:  5'- aAACAUGUUCAcGAAAAGUCuaacAGGUu-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAG----UCCGuuc -5'
11692 3' -42.1 NC_003102.1 + 132918 0.66 1
Target:  5'- aAACAUGUUCAUAAAuAGUCuGaUAAa -3'
miRNA:   3'- -UUGUACAAGUAUUUuUCAGuCcGUUc -5'
11692 3' -42.1 NC_003102.1 + 132870 0.71 0.999921
Target:  5'- aAACAUGUUCAcGAAAAGUCuaacAGGUu-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAG----UCCGuuc -5'
11692 3' -42.1 NC_003102.1 + 132838 0.7 0.999969
Target:  5'- aAACAUGUUCAcGAAAAGUauaaCAGGUu-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCA----GUCCGuuc -5'
11692 3' -42.1 NC_003102.1 + 132774 0.69 0.999995
Target:  5'- gAACAUGUUCAcAAAAAGUCuaacGGUc-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGu---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 132734 0.69 0.999984
Target:  5'- aAACAUGUUCAcGAAAAGUCuaacGGUc-- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGu---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 132642 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132539 0.74 0.997689
Target:  5'- aAACAUGUUUAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132507 0.66 1
Target:  5'- gAACAUGUUCAcGAAAAGUCcaacuuCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGucc---GUUC- -5'
11692 3' -42.1 NC_003102.1 + 132411 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132292 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132260 0.7 0.999942
Target:  5'- gAACAUGUUCAcGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132228 0.69 0.999984
Target:  5'- gAACAUGUUUuUAAAAAGUCGGccGCGu- -3'
miRNA:   3'- -UUGUACAAGuAUUUUUCAGUC--CGUuc -5'
11692 3' -42.1 NC_003102.1 + 118424 0.71 0.999815
Target:  5'- cAGCGUGUggCA--GAccGUCAGGCAGGu -3'
miRNA:   3'- -UUGUACAa-GUauUUuuCAGUCCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.