miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 3' -42.1 NC_003102.1 + 42629 1.08 0.063839
Target:  5'- aAACAUGUUCAUAAAAAGUCAGGCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42620 0.83 0.819743
Target:  5'- gAACAUGUUCAUGAAAAGUUGGaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42508 0.8 0.93058
Target:  5'- uACAUGUUCaAUGAAAAGUCAG-CAAGu -3'
miRNA:   3'- uUGUACAAG-UAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 10849 0.8 0.936281
Target:  5'- aAACA-GUUCAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- -UUGUaCAAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 112819 0.8 0.936281
Target:  5'- cACAUGUUCAcGAAAAGUCAGaCAGGu -3'
miRNA:   3'- uUGUACAAGUaUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55813 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132292 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132642 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 132411 0.79 0.951552
Target:  5'- aAACAUGUUCAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 112732 0.78 0.964153
Target:  5'- gAACAUGUUUAUGAAAAGUCAuaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 104233 0.77 0.977116
Target:  5'- cAACGUGUUCAUAAAAAGUCAacaguaauGCAAa -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUc-------CGUUc -5'
11692 3' -42.1 NC_003102.1 + 55425 0.77 0.979731
Target:  5'- aAACAUGUUCAUAAAAAGUCcaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 54726 0.77 0.982117
Target:  5'- -uCAUGUUCAUGAAAAGUCAuaCAAGu -3'
miRNA:   3'- uuGUACAAGUAUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 26974 0.77 0.984286
Target:  5'- aAACAUGUUCAUGAAAAGUCcaacGGUu-- -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGu---CCGuuc -5'
11692 3' -42.1 NC_003102.1 + 112707 0.76 0.986249
Target:  5'- uAACAUGUUUAUGAAAAGUCAGa---- -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCcguuc -5'
11692 3' -42.1 NC_003102.1 + 103622 0.76 0.992285
Target:  5'- cGACAUGUUCAcGAAAAGUCGGacGCGu- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUC--CGUuc -5'
11692 3' -42.1 NC_003102.1 + 111343 0.74 0.997208
Target:  5'- cGGCAUGUaCGUAAuaauGUCGGGCAAu -3'
miRNA:   3'- -UUGUACAaGUAUUuuu-CAGUCCGUUc -5'
11692 3' -42.1 NC_003102.1 + 132539 0.74 0.997689
Target:  5'- aAACAUGUUUAUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 55919 0.74 0.998098
Target:  5'- cAAUAUGUUCGUGAAAAGUCuaaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGuccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42830 0.74 0.998098
Target:  5'- aAACAUGUUaAUGAAAAGUCAGcCGGGu -3'
miRNA:   3'- -UUGUACAAgUAUUUUUCAGUCcGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.