miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 3' -42.1 NC_003102.1 + 42629 1.08 0.063839
Target:  5'- aAACAUGUUCAUAAAAAGUCAGGCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 136115 0.66 1
Target:  5'- --uGUGUUCGauaaUGAGgcGUCGGGCAu- -3'
miRNA:   3'- uugUACAAGU----AUUUuuCAGUCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 93402 0.66 1
Target:  5'- aGACAcgaaaGUUCGUcGAcGGUCgAGGCGAGa -3'
miRNA:   3'- -UUGUa----CAAGUAuUUuUCAG-UCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 6245 0.66 1
Target:  5'- gAACAUGUUCGUGA----UCuGGCAc- -3'
miRNA:   3'- -UUGUACAAGUAUUuuucAGuCCGUuc -5'
11692 3' -42.1 NC_003102.1 + 137127 0.66 1
Target:  5'- aGACAUGUcCAcGAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAaGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 54914 0.67 1
Target:  5'- gAACAUGUUCAUAAAuuG-CuGGCu-- -3'
miRNA:   3'- -UUGUACAAGUAUUUuuCaGuCCGuuc -5'
11692 3' -42.1 NC_003102.1 + 56050 0.7 0.999942
Target:  5'- aAACAUGUUUAcGAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 5761 0.71 0.999911
Target:  5'- gAACA-GUUCGgccuuuuauAGUCGGGCAGGa -3'
miRNA:   3'- -UUGUaCAAGUauuuu----UCAGUCCGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42564 0.72 0.999687
Target:  5'- --aAUGUUCAcGAAAAGUCAGaCAAGu -3'
miRNA:   3'- uugUACAAGUaUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 103622 0.76 0.992285
Target:  5'- cGACAUGUUCAcGAAAAGUCGGacGCGu- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUC--CGUuc -5'
11692 3' -42.1 NC_003102.1 + 112707 0.76 0.986249
Target:  5'- uAACAUGUUUAUGAAAAGUCAGa---- -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCcguuc -5'
11692 3' -42.1 NC_003102.1 + 104233 0.77 0.977116
Target:  5'- cAACGUGUUCAUAAAAAGUCAacaguaauGCAAa -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUc-------CGUUc -5'
11692 3' -42.1 NC_003102.1 + 112732 0.78 0.964153
Target:  5'- gAACAUGUUUAUGAAAAGUCAuaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42508 0.8 0.93058
Target:  5'- uACAUGUUCaAUGAAAAGUCAG-CAAGu -3'
miRNA:   3'- uUGUACAAG-UAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 79510 0.66 1
Target:  5'- cGACAUGUUCGUGAGAucuauaugcgaguGugagucgcuuaaacuGUUAGGCAAu -3'
miRNA:   3'- -UUGUACAAGUAUUUU-------------U---------------CAGUCCGUUc -5'
11692 3' -42.1 NC_003102.1 + 132918 0.66 1
Target:  5'- aAACAUGUUCAUAAAuAGUCuGaUAAa -3'
miRNA:   3'- -UUGUACAAGUAUUUuUCAGuCcGUUc -5'
11692 3' -42.1 NC_003102.1 + 98038 0.66 1
Target:  5'- ------aUCAUGAAAAGUCAGaCAAGu -3'
miRNA:   3'- uuguacaAGUAUUUUUCAGUCcGUUC- -5'
11692 3' -42.1 NC_003102.1 + 67343 0.66 1
Target:  5'- uAACAUGUUUGcAAAAAGUCAGaCAc- -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUCcGUuc -5'
11692 3' -42.1 NC_003102.1 + 133365 0.66 1
Target:  5'- gAACAUGUUCA-GAAAAGUUAuaCAAGu -3'
miRNA:   3'- -UUGUACAAGUaUUUUUCAGUccGUUC- -5'
11692 3' -42.1 NC_003102.1 + 42620 0.83 0.819743
Target:  5'- gAACAUGUUCAUGAAAAGUUGGaCAAGu -3'
miRNA:   3'- -UUGUACAAGUAUUUUUCAGUCcGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.