Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11692 | 5' | -46.2 | NC_003102.1 | + | 42663 | 1.07 | 0.027268 |
Target: 5'- gAACCCGGCUGACUUUUCAUUAACAUGu -3' miRNA: 3'- -UUGGGCCGACUGAAAAGUAAUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 104516 | 0.92 | 0.208763 |
Target: 5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 112569 | 0.92 | 0.208763 |
Target: 5'- gAACCUGGCcGACUUUUCGUUGACAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAAUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 89482 | 0.84 | 0.515364 |
Target: 5'- aAACCCGGCcGACUUUUCGUgguuaAACAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 112472 | 0.8 | 0.703884 |
Target: 5'- gAACCUGGCUGACUUUUCAUa------ -3' miRNA: 3'- -UUGGGCCGACUGAAAAGUAauuguac -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 76479 | 0.8 | 0.72572 |
Target: 5'- gAACCUGGCcGACUUUUCGUUGAUuguAUGa -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAAUUG---UAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 103480 | 0.78 | 0.788511 |
Target: 5'- gAACCUGGCcGACUUUUCGUgcucaAACGUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAa----UUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 112653 | 0.77 | 0.836299 |
Target: 5'- gAACCUGuCUGACUUUUCGUgAACAUGu -3' miRNA: 3'- -UUGGGCcGACUGAAAAGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 26134 | 0.76 | 0.878529 |
Target: 5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3' miRNA: 3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 26193 | 0.76 | 0.878529 |
Target: 5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3' miRNA: 3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 54594 | 0.74 | 0.947615 |
Target: 5'- gAACCUGGCcGACUUUUUuUUGACGUu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGuAAUUGUAc -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 67210 | 0.74 | 0.947615 |
Target: 5'- gAACCUGGCcGACUUUUCGauauucaUAACGUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUa------AUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 54789 | 0.73 | 0.960518 |
Target: 5'- gAACCUGGCUGACUUUUUAg------- -3' miRNA: 3'- -UUGGGCCGACUGAAAAGUaauuguac -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 61379 | 0.73 | 0.960518 |
Target: 5'- aAACCUGGCcGACUUUUUGUaAACAUa -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAaUUGUAc -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 42895 | 0.73 | 0.964281 |
Target: 5'- gAACCUGGCcGACUUUUUGUgAAUAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 54561 | 0.73 | 0.964281 |
Target: 5'- aAACuuGuaUGACUUUUCAUgAACAUGa -3' miRNA: 3'- -UUGggCcgACUGAAAAGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 121813 | 0.73 | 0.967786 |
Target: 5'- gAACCUGGCcGACUUUucgauaagUCAUcGACAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAA--------AGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 42674 | 0.72 | 0.971039 |
Target: 5'- uAACuuG-CUGACUUUUCAUUGaACAUGu -3' miRNA: 3'- -UUGggCcGACUGAAAAGUAAU-UGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 67398 | 0.72 | 0.97405 |
Target: 5'- gAACCUGGCcGACUUUucguaauaagUCAUcGACAUGu -3' miRNA: 3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5' |
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11692 | 5' | -46.2 | NC_003102.1 | + | 67113 | 0.72 | 0.97405 |
Target: 5'- gAACCUGGCcGACUUUUCAUaucACAa- -3' miRNA: 3'- -UUGGGCCGaCUGAAAAGUAau-UGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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