miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 10518 0.7 0.992951
Target:  5'- gAACgUGuCUGACUUUUCGUaGACAUGg -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 10574 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 10650 0.69 0.996296
Target:  5'- aAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 10732 0.7 0.993955
Target:  5'- gAACCUGGCcGACUUUUCGU--GC-UGa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauUGuAC- -5'
11692 5' -46.2 NC_003102.1 + 10815 0.69 0.996886
Target:  5'- uAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 25836 0.68 0.999024
Target:  5'- gAACgUGGCcGACUUUUCGUaAACAg- -3'
miRNA:   3'- -UUGgGCCGaCUGAAAAGUAaUUGUac -5'
11692 5' -46.2 NC_003102.1 + 25968 0.72 0.97405
Target:  5'- gAACCUGGCcGACUUUUCGUgauCAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuGUac -5'
11692 5' -46.2 NC_003102.1 + 26048 0.72 0.976827
Target:  5'- aAACCUGGCcGACUUUUCGUgauCAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuGUac -5'
11692 5' -46.2 NC_003102.1 + 26107 0.66 0.999813
Target:  5'- gAACCUGGCcGACUUUUUGUgcuCAa- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuGUac -5'
11692 5' -46.2 NC_003102.1 + 26134 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26190 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 26193 0.76 0.878529
Target:  5'- gAACgUGuCUGACUUUUCGUUAACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAAUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26267 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 26326 0.66 0.999813
Target:  5'- gAAUuuGGCcGACUUUuuggUCAUcGACAUGu -3'
miRNA:   3'- -UUGggCCGaCUGAAA----AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26579 0.68 0.999024
Target:  5'- gAACgUGuCUGACUUUUCGUgGACGUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26765 0.71 0.987543
Target:  5'- --aCCGuaUGACUUUUCGUaAACAUGu -3'
miRNA:   3'- uugGGCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26894 0.71 0.987543
Target:  5'- --aCCGuaUGACUUUUCGUgAACAUGu -3'
miRNA:   3'- uugGGCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 33002 0.66 0.999891
Target:  5'- cAGCCCGGCUGGCc---CAgUAGCu-- -3'
miRNA:   3'- -UUGGGCCGACUGaaaaGUaAUUGuac -5'
11692 5' -46.2 NC_003102.1 + 36230 0.67 0.999603
Target:  5'- gAACgUGGCcGACUUUUCAUguACAUu -3'
miRNA:   3'- -UUGgGCCGaCUGAAAAGUAauUGUAc -5'
11692 5' -46.2 NC_003102.1 + 42663 1.07 0.027268
Target:  5'- gAACCCGGCUGACUUUUCAUUAACAUGu -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUAAUUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.